QUERY           : IKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR : QUERY 
UniRef90_S2XKI6 : IKREQQLANAKQLVTEFEKTHTVQAHRKAQRAVNIVSFEYKAQKDALQQRIENVLKQGYVK : UniRef90_S2XKI6
UniRef90_H3XZA6 : -------MDAQKAVNFFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLKYNTLK : UniRef90_H3XZA6
UniRef90_G5JLK6 : --------EAKKTVAEFQRKRTIATHRKAQRAVNLIHFDYKYEKKKLQKQIDIVLKYNILK : UniRef90_G5JLK6

                : 1---------11--------21--------31--------41--------51-------- :
OrigSeq         : IKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVR : OrigSeq

Jnet            : --HHHHHHHHHHHHHHHHH--HHHHHHHHHHH--EEEE--HHHHHHHHHHHHHHHH----- : Jnet
jhmm            : --HHHHHHHHHHHHHHHHH--HHHHHHHHHHHEEEEEE--HHHHHHHHHHHHHHHH----- : jhmm
jpssm           : --HHHHHHHHHHHHHHHHHH--HHHHHHHHH---EEEE--HHHHHHHHHHHHHHHH----- : jpssm

Lupas 14        : ------------------------------------------------------------- : Lupas 14
Lupas 21        : ------------------------------------------------------------- : Lupas 21
Lupas 28        : ------------------------------------------------------------- : Lupas 28

Jnet_25         : ------B--B--BB--B----BB--B--B--BB-BB-B-B-B----B---B--BB---B-- : Jnet_25
Jnet_5          : -------------B--------------------BB--------------B--B------- : Jnet_5
Jnet_0          : ------------------------------------------------------------- : Jnet_0
Jnet Rel        : 9548999999999999987120179998872021056412178999999999998527999 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.