SILENT_MODE BLOCK_FILE jp_vluMl5p.concise.blc MAX_NSEQ 223 MAX_INPUT_LEN 225 OUTPUT_FILE jp_vluMl5p.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 90 212 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 213 90 222 H SPACE SUB_CHARS 1 213 90 222 E SPACE SUB_CHARS 1 213 90 222 - SPACE STRAND 12 216 13 COLOUR_TEXT_REGION 12 216 13 216 51 STRAND 19 216 26 COLOUR_TEXT_REGION 19 216 26 216 51 STRAND 30 216 36 COLOUR_TEXT_REGION 30 216 36 216 51 STRAND 83 216 87 COLOUR_TEXT_REGION 83 216 87 216 51 HELIX 37 216 43 COLOUR_TEXT_REGION 37 216 43 216 50 HELIX 51 216 60 COLOUR_TEXT_REGION 51 216 60 216 50 HELIX 63 216 75 COLOUR_TEXT_REGION 63 216 75 216 50 STRAND 12 221 14 COLOUR_TEXT_REGION 12 221 14 221 51 STRAND 19 221 26 COLOUR_TEXT_REGION 19 221 26 221 51 STRAND 30 221 36 COLOUR_TEXT_REGION 30 221 36 221 51 STRAND 83 221 88 COLOUR_TEXT_REGION 83 221 88 221 51 HELIX 37 221 44 COLOUR_TEXT_REGION 37 221 44 221 50 HELIX 51 221 60 COLOUR_TEXT_REGION 51 221 60 221 50 HELIX 63 221 75 COLOUR_TEXT_REGION 63 221 75 221 50 STRAND 12 222 12 COLOUR_TEXT_REGION 12 222 12 222 51 STRAND 19 222 26 COLOUR_TEXT_REGION 19 222 26 222 51 STRAND 31 222 36 COLOUR_TEXT_REGION 31 222 36 222 51 STRAND 83 222 87 COLOUR_TEXT_REGION 83 222 87 222 51 HELIX 37 222 43 COLOUR_TEXT_REGION 37 222 43 222 50 HELIX 51 222 75 COLOUR_TEXT_REGION 51 222 75 222 50