QUERY                  : ELFSVPYFIENLKQHIEMNQSEDKIHAMNSYYRSVVSTLVQDQLTKNAVVLKRIQHLDEAYNKVKRG : QUERY 
UniRef90_UPI000287D1D7 : -LFSVDYFKSALQLQISKNNGMTPNQTLNSYYHTVVSAIIQDRINKNFELIRRIRNLDTAYNAVKK- : UniRef90_UPI000287D1D7
UniRef90_I8UJN7        : EQFSVAFFEENFQQYIERNKDFSKAHAMNAYYRSIVGTLINDHLNKNGEIVRRIRNLEEAYNNVK-- : UniRef90_I8UJN7
UniRef90_U6BDM2        : QLFTTERLIANFKEYIRQNEAHTKRHALNAYYKTVAGSILSDRIAKNADLIVRMRHLEEAYQHV--- : UniRef90_U6BDM2
UniRef90_UPI00040AD7E8 : EQFSVSFFEENFKQYIERNKDFSKVHAMNAYYRSIVGTL---------------------------- : UniRef90_UPI00040AD7E8

                       : 1---------11--------21--------31--------41--------51--------61----- :
OrigSeq                : ELFSVPYFIENLKQHIEMNQSEDKIHAMNSYYRSVVSTLVQDQLTKNAVVLKRIQHLDEAYNKVKRG : OrigSeq

Jnet                   : ----HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--- : Jnet
jhmm                   : ----HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH--- : jhmm
jpssm                  : ----HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--- : jpssm

Lupas 14               : ------------------------------------------------------------------- : Lupas 14
Lupas 21               : ------------------------------------------------------------------- : Lupas 21
Lupas 28               : ------------------------------------------------------------------- : Lupas 28

Jnet_25                : --BBB-BB--BB--BB----------BB-BBB-BBBBBBB---B---B-BB-BB--B--BB--B--- : Jnet_25
Jnet_5                 : -------B---B---B-----------B------BB--BB---------BB--B------------- : Jnet_5
Jnet_0                 : -------B---B-----------------------------------------B------------- : Jnet_0
Jnet Rel               : 9983799999999998744887627888768999999999987408668999987589999985199 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.