Filename Description -------- ----------- jp_uLizs2_.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_uLizs2_.als Alscript command file. Used to generate PS/PDF outputjp_uLizs2_.blast.gz PSIBLAST output (compressed) jp_uLizs2_.coils.csv The output from coils in CSV format jp_uLizs2_.coilseq.lupas_14 The output from coils using a window length of 14 jp_uLizs2_.coilseq.lupas_21 The output from coils using a window length of 21 jp_uLizs2_.coilseq.lupas_28 The output from coils using a window length of 28 jp_uLizs2_.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_uLizs2_.concise.blc A BLC file of the prediction and alignment jp_uLizs2_.concise.pdf A PDF file of the prediction and alignment jp_uLizs2_.fasta Input query sequence in FASTA format jp_uLizs2_.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_uLizs2_.hmm The HHMer2 profile of the alignment jp_uLizs2_.html A HTML file of the prediction and alignment jp_uLizs2_.input Your raw input jp_uLizs2_.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_uLizs2_.jnet The output from Jnet jp_uLizs2_.profile PSIBLAST profile jp_uLizs2_.pssm PSIBLAST PSSM in a format for Jnet jp_uLizs2_.seq Your sequence jp_uLizs2_.simple.html The brief HTML output of the query sequence and prediction only jp_uLizs2_.svg.html A Jalview generated SVG file with summary of the results.