SILENT_MODE
BLOCK_FILE jp_uLizs2_.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_uLizs2_.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 153 39   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 40 153 49 H SPACE
SUB_CHARS 1 40 153 49 E SPACE
SUB_CHARS 1 40 153 49 - SPACE
STRAND 5 43 6
COLOUR_TEXT_REGION 5 43 6 43 51
STRAND 11 43 12
COLOUR_TEXT_REGION 11 43 12 43 51
STRAND 46 43 51
COLOUR_TEXT_REGION 46 43 51 43 51
STRAND 56 43 57
COLOUR_TEXT_REGION 56 43 57 43 51
STRAND 77 43 80
COLOUR_TEXT_REGION 77 43 80 43 51
STRAND 88 43 94
COLOUR_TEXT_REGION 88 43 94 43 51
STRAND 101 43 107
COLOUR_TEXT_REGION 101 43 107 43 51
STRAND 126 43 134
COLOUR_TEXT_REGION 126 43 134 43 51
STRAND 138 43 145
COLOUR_TEXT_REGION 138 43 145 43 51
HELIX 20 43 26
COLOUR_TEXT_REGION 20 43 26 43 50
HELIX 30 43 36
COLOUR_TEXT_REGION 30 43 36 43 50
HELIX 59 43 68
COLOUR_TEXT_REGION 59 43 68 43 50
HELIX 108 43 110
COLOUR_TEXT_REGION 108 43 110 43 50
HELIX 113 43 120
COLOUR_TEXT_REGION 113 43 120 43 50
STRAND 5 48 6
COLOUR_TEXT_REGION 5 48 6 48 51
STRAND 10 48 13
COLOUR_TEXT_REGION 10 48 13 48 51
STRAND 46 48 52
COLOUR_TEXT_REGION 46 48 52 48 51
STRAND 56 48 57
COLOUR_TEXT_REGION 56 48 57 48 51
STRAND 77 48 80
COLOUR_TEXT_REGION 77 48 80 48 51
STRAND 89 48 94
COLOUR_TEXT_REGION 89 48 94 48 51
STRAND 101 48 109
COLOUR_TEXT_REGION 101 48 109 48 51
STRAND 125 48 135
COLOUR_TEXT_REGION 125 48 135 48 51
STRAND 138 48 145
COLOUR_TEXT_REGION 138 48 145 48 51
HELIX 20 48 26
COLOUR_TEXT_REGION 20 48 26 48 50
HELIX 30 48 36
COLOUR_TEXT_REGION 30 48 36 48 50
HELIX 59 48 64
COLOUR_TEXT_REGION 59 48 64 48 50
HELIX 113 48 120
COLOUR_TEXT_REGION 113 48 120 48 50
STRAND 5 49 5
COLOUR_TEXT_REGION 5 49 5 49 51
STRAND 45 49 51
COLOUR_TEXT_REGION 45 49 51 49 51
STRAND 56 49 58
COLOUR_TEXT_REGION 56 49 58 49 51
STRAND 77 49 80
COLOUR_TEXT_REGION 77 49 80 49 51
STRAND 88 49 94
COLOUR_TEXT_REGION 88 49 94 49 51
STRAND 126 49 134
COLOUR_TEXT_REGION 126 49 134 49 51
STRAND 138 49 145
COLOUR_TEXT_REGION 138 49 145 49 51
HELIX 20 49 25
COLOUR_TEXT_REGION 20 49 25 49 50
HELIX 30 49 36
COLOUR_TEXT_REGION 30 49 36 49 50
HELIX 59 49 69
COLOUR_TEXT_REGION 59 49 69 49 50
HELIX 101 49 120
COLOUR_TEXT_REGION 101 49 120 49 50