SILENT_MODE
BLOCK_FILE jp_RpCpkXu.concise.blc
MAX_NSEQ 109
MAX_INPUT_LEN 111
OUTPUT_FILE jp_RpCpkXu.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 111 98   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 99 111 108 H SPACE
SUB_CHARS 1 99 111 108 E SPACE
SUB_CHARS 1 99 111 108 - SPACE
STRAND 48 102 52
COLOUR_TEXT_REGION 48 102 52 102 51
STRAND 58 102 62
COLOUR_TEXT_REGION 58 102 62 102 51
HELIX 5 102 18
COLOUR_TEXT_REGION 5 102 18 102 50
HELIX 22 102 25
COLOUR_TEXT_REGION 22 102 25 102 50
HELIX 31 102 43
COLOUR_TEXT_REGION 31 102 43 102 50
HELIX 66 102 76
COLOUR_TEXT_REGION 66 102 76 102 50
HELIX 91 102 95
COLOUR_TEXT_REGION 91 102 95 102 50
HELIX 100 102 108
COLOUR_TEXT_REGION 100 102 108 102 50
STRAND 47 107 52
COLOUR_TEXT_REGION 47 107 52 107 51
STRAND 58 107 62
COLOUR_TEXT_REGION 58 107 62 107 51
STRAND 91 107 95
COLOUR_TEXT_REGION 91 107 95 107 51
HELIX 5 107 18
COLOUR_TEXT_REGION 5 107 18 107 50
HELIX 34 107 43
COLOUR_TEXT_REGION 34 107 43 107 50
HELIX 67 107 75
COLOUR_TEXT_REGION 67 107 75 107 50
HELIX 100 107 108
COLOUR_TEXT_REGION 100 107 108 107 50
STRAND 48 108 52
COLOUR_TEXT_REGION 48 108 52 108 51
STRAND 58 108 63
COLOUR_TEXT_REGION 58 108 63 108 51
HELIX 5 108 18
COLOUR_TEXT_REGION 5 108 18 108 50
HELIX 21 108 26
COLOUR_TEXT_REGION 21 108 26 108 50
HELIX 31 108 43
COLOUR_TEXT_REGION 31 108 43 108 50
HELIX 66 108 76
COLOUR_TEXT_REGION 66 108 76 108 50
HELIX 86 108 96
COLOUR_TEXT_REGION 86 108 96 108 50
HELIX 100 108 108
COLOUR_TEXT_REGION 100 108 108 108 50