SILENT_MODE
BLOCK_FILE jp_QgZgDxi.concise.blc
MAX_NSEQ 242
MAX_INPUT_LEN 244
OUTPUT_FILE jp_QgZgDxi.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 83 231   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 232 83 241 H SPACE
SUB_CHARS 1 232 83 241 E SPACE
SUB_CHARS 1 232 83 241 - SPACE
STRAND 50 235 52
COLOUR_TEXT_REGION 50 235 52 235 51
HELIX 10 235 22
COLOUR_TEXT_REGION 10 235 22 235 50
HELIX 28 235 41
COLOUR_TEXT_REGION 28 235 41 235 50
HELIX 62 235 75
COLOUR_TEXT_REGION 62 235 75 235 50
STRAND 50 240 52
COLOUR_TEXT_REGION 50 240 52 240 51
HELIX 10 240 22
COLOUR_TEXT_REGION 10 240 22 240 50
HELIX 28 240 40
COLOUR_TEXT_REGION 28 240 40 240 50
HELIX 62 240 75
COLOUR_TEXT_REGION 62 240 75 240 50
STRAND 50 241 52
COLOUR_TEXT_REGION 50 241 52 241 51
HELIX 10 241 21
COLOUR_TEXT_REGION 10 241 21 241 50
HELIX 28 241 41
COLOUR_TEXT_REGION 28 241 41 241 50
HELIX 62 241 75
COLOUR_TEXT_REGION 62 241 75 241 50