SILENT_MODE BLOCK_FILE jp_xg4urNJ.concise.blc MAX_NSEQ 813 MAX_INPUT_LEN 815 OUTPUT_FILE jp_xg4urNJ.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 309 802 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 803 309 812 H SPACE SUB_CHARS 1 803 309 812 E SPACE SUB_CHARS 1 803 309 812 - SPACE STRAND 5 806 11 COLOUR_TEXT_REGION 5 806 11 806 51 STRAND 78 806 84 COLOUR_TEXT_REGION 78 806 84 806 51 STRAND 106 806 111 COLOUR_TEXT_REGION 106 806 111 806 51 STRAND 140 806 143 COLOUR_TEXT_REGION 140 806 143 806 51 STRAND 175 806 180 COLOUR_TEXT_REGION 175 806 180 806 51 STRAND 215 806 221 COLOUR_TEXT_REGION 215 806 221 806 51 STRAND 249 806 253 COLOUR_TEXT_REGION 249 806 253 806 51 STRAND 283 806 286 COLOUR_TEXT_REGION 283 806 286 806 51 HELIX 18 806 29 COLOUR_TEXT_REGION 18 806 29 806 50 HELIX 36 806 49 COLOUR_TEXT_REGION 36 806 49 806 50 HELIX 55 806 72 COLOUR_TEXT_REGION 55 806 72 806 50 HELIX 92 806 101 COLOUR_TEXT_REGION 92 806 101 806 50 HELIX 116 806 134 COLOUR_TEXT_REGION 116 806 134 806 50 HELIX 151 806 166 COLOUR_TEXT_REGION 151 806 166 806 50 HELIX 196 806 209 COLOUR_TEXT_REGION 196 806 209 806 50 HELIX 234 806 243 COLOUR_TEXT_REGION 234 806 243 806 50 HELIX 263 806 278 COLOUR_TEXT_REGION 263 806 278 806 50 HELIX 293 806 307 COLOUR_TEXT_REGION 293 806 307 806 50 STRAND 5 811 11 COLOUR_TEXT_REGION 5 811 11 811 51 STRAND 79 811 85 COLOUR_TEXT_REGION 79 811 85 811 51 STRAND 106 811 111 COLOUR_TEXT_REGION 106 811 111 811 51 STRAND 140 811 143 COLOUR_TEXT_REGION 140 811 143 811 51 STRAND 175 811 181 COLOUR_TEXT_REGION 175 811 181 811 51 STRAND 215 811 221 COLOUR_TEXT_REGION 215 811 221 811 51 STRAND 249 811 253 COLOUR_TEXT_REGION 249 811 253 811 51 STRAND 263 811 263 COLOUR_TEXT_REGION 263 811 263 811 51 STRAND 283 811 286 COLOUR_TEXT_REGION 283 811 286 811 51 HELIX 18 811 28 COLOUR_TEXT_REGION 18 811 28 811 50 HELIX 37 811 49 COLOUR_TEXT_REGION 37 811 49 811 50 HELIX 55 811 72 COLOUR_TEXT_REGION 55 811 72 811 50 HELIX 92 811 101 COLOUR_TEXT_REGION 92 811 101 811 50 HELIX 116 811 134 COLOUR_TEXT_REGION 116 811 134 811 50 HELIX 151 811 166 COLOUR_TEXT_REGION 151 811 166 811 50 HELIX 187 811 189 COLOUR_TEXT_REGION 187 811 189 811 50 HELIX 196 811 209 COLOUR_TEXT_REGION 196 811 209 811 50 HELIX 234 811 242 COLOUR_TEXT_REGION 234 811 242 811 50 HELIX 264 811 278 COLOUR_TEXT_REGION 264 811 278 811 50 HELIX 293 811 307 COLOUR_TEXT_REGION 293 811 307 811 50 STRAND 5 812 11 COLOUR_TEXT_REGION 5 812 11 812 51 STRAND 77 812 83 COLOUR_TEXT_REGION 77 812 83 812 51 STRAND 106 812 111 COLOUR_TEXT_REGION 106 812 111 812 51 STRAND 139 812 143 COLOUR_TEXT_REGION 139 812 143 812 51 STRAND 174 812 179 COLOUR_TEXT_REGION 174 812 179 812 51 STRAND 186 812 187 COLOUR_TEXT_REGION 186 812 187 812 51 STRAND 216 812 221 COLOUR_TEXT_REGION 216 812 221 812 51 STRAND 249 812 252 COLOUR_TEXT_REGION 249 812 252 812 51 STRAND 282 812 287 COLOUR_TEXT_REGION 282 812 287 812 51 HELIX 19 812 30 COLOUR_TEXT_REGION 19 812 30 812 50 HELIX 36 812 49 COLOUR_TEXT_REGION 36 812 49 812 50 HELIX 55 812 72 COLOUR_TEXT_REGION 55 812 72 812 50 HELIX 92 812 101 COLOUR_TEXT_REGION 92 812 101 812 50 HELIX 113 812 133 COLOUR_TEXT_REGION 113 812 133 812 50 HELIX 150 812 166 COLOUR_TEXT_REGION 150 812 166 812 50 HELIX 196 812 209 COLOUR_TEXT_REGION 196 812 209 812 50 HELIX 234 812 243 COLOUR_TEXT_REGION 234 812 243 812 50 HELIX 263 812 278 COLOUR_TEXT_REGION 263 812 278 812 50 HELIX 293 812 307 COLOUR_TEXT_REGION 293 812 307 812 50