SILENT_MODE
BLOCK_FILE jp_qo_GTv0.concise.blc
MAX_NSEQ 256
MAX_INPUT_LEN 258
OUTPUT_FILE jp_qo_GTv0.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 101 245   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 246 101 255 H SPACE
SUB_CHARS 1 246 101 255 E SPACE
SUB_CHARS 1 246 101 255 - SPACE
STRAND 52 249 56
COLOUR_TEXT_REGION 52 249 56 249 51
HELIX 6 249 26
COLOUR_TEXT_REGION 6 249 26 249 50
HELIX 31 249 49
COLOUR_TEXT_REGION 31 249 49 249 50
HELIX 64 249 84
COLOUR_TEXT_REGION 64 249 84 249 50
HELIX 90 249 99
COLOUR_TEXT_REGION 90 249 99 249 50
STRAND 52 254 56
COLOUR_TEXT_REGION 52 254 56 254 51
HELIX 6 254 27
COLOUR_TEXT_REGION 6 254 27 254 50
HELIX 31 254 50
COLOUR_TEXT_REGION 31 254 50 254 50
HELIX 64 254 85
COLOUR_TEXT_REGION 64 254 85 254 50
HELIX 91 254 99
COLOUR_TEXT_REGION 91 254 99 254 50
STRAND 52 255 56
COLOUR_TEXT_REGION 52 255 56 255 51
HELIX 8 255 19
COLOUR_TEXT_REGION 8 255 19 255 50
HELIX 21 255 25
COLOUR_TEXT_REGION 21 255 25 255 50
HELIX 31 255 48
COLOUR_TEXT_REGION 31 255 48 255 50
HELIX 63 255 84
COLOUR_TEXT_REGION 63 255 84 255 50
HELIX 90 255 99
COLOUR_TEXT_REGION 90 255 99 255 50