SILENT_MODE BLOCK_FILE jp_gdbhyVs.concise.blc MAX_NSEQ 778 MAX_INPUT_LEN 780 OUTPUT_FILE jp_gdbhyVs.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 120 767 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 768 120 777 H SPACE SUB_CHARS 1 768 120 777 E SPACE SUB_CHARS 1 768 120 777 - SPACE STRAND 3 771 8 COLOUR_TEXT_REGION 3 771 8 771 51 STRAND 17 771 19 COLOUR_TEXT_REGION 17 771 19 771 51 STRAND 24 771 27 COLOUR_TEXT_REGION 24 771 27 771 51 STRAND 55 771 63 COLOUR_TEXT_REGION 55 771 63 771 51 STRAND 87 771 89 COLOUR_TEXT_REGION 87 771 89 771 51 STRAND 94 771 103 COLOUR_TEXT_REGION 94 771 103 771 51 STRAND 109 771 116 COLOUR_TEXT_REGION 109 771 116 771 51 HELIX 29 771 46 COLOUR_TEXT_REGION 29 771 46 771 50 HELIX 72 771 81 COLOUR_TEXT_REGION 72 771 81 771 50 STRAND 3 776 8 COLOUR_TEXT_REGION 3 776 8 776 51 STRAND 17 776 18 COLOUR_TEXT_REGION 17 776 18 776 51 STRAND 25 776 27 COLOUR_TEXT_REGION 25 776 27 776 51 STRAND 55 776 63 COLOUR_TEXT_REGION 55 776 63 776 51 STRAND 87 776 88 COLOUR_TEXT_REGION 87 776 88 776 51 STRAND 94 776 103 COLOUR_TEXT_REGION 94 776 103 776 51 STRAND 109 776 116 COLOUR_TEXT_REGION 109 776 116 776 51 HELIX 29 776 45 COLOUR_TEXT_REGION 29 776 45 776 50 HELIX 71 776 82 COLOUR_TEXT_REGION 71 776 82 776 50 STRAND 3 777 8 COLOUR_TEXT_REGION 3 777 8 777 51 STRAND 18 777 19 COLOUR_TEXT_REGION 18 777 19 777 51 STRAND 24 777 26 COLOUR_TEXT_REGION 24 777 26 777 51 STRAND 54 777 63 COLOUR_TEXT_REGION 54 777 63 777 51 STRAND 86 777 89 COLOUR_TEXT_REGION 86 777 89 777 51 STRAND 93 777 103 COLOUR_TEXT_REGION 93 777 103 777 51 STRAND 109 777 116 COLOUR_TEXT_REGION 109 777 116 777 51 HELIX 29 777 46 COLOUR_TEXT_REGION 29 777 46 777 50 HELIX 73 777 80 COLOUR_TEXT_REGION 73 777 80 777 50