SILENT_MODE BLOCK_FILE jp_MQSb4nX.concise.blc MAX_NSEQ 956 MAX_INPUT_LEN 958 OUTPUT_FILE jp_MQSb4nX.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 59 945 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 946 59 955 H SPACE SUB_CHARS 1 946 59 955 E SPACE SUB_CHARS 1 946 59 955 - SPACE STRAND 16 949 20 COLOUR_TEXT_REGION 16 949 20 949 51 STRAND 25 949 28 COLOUR_TEXT_REGION 25 949 28 949 51 STRAND 33 949 38 COLOUR_TEXT_REGION 33 949 38 949 51 HELIX 4 949 8 COLOUR_TEXT_REGION 4 949 8 949 50 STRAND 17 954 20 COLOUR_TEXT_REGION 17 954 20 954 51 STRAND 25 954 28 COLOUR_TEXT_REGION 25 954 28 954 51 STRAND 33 954 38 COLOUR_TEXT_REGION 33 954 38 954 51 HELIX 4 954 8 COLOUR_TEXT_REGION 4 954 8 954 50 STRAND 7 955 9 COLOUR_TEXT_REGION 7 955 9 955 51 STRAND 16 955 20 COLOUR_TEXT_REGION 16 955 20 955 51 STRAND 25 955 28 COLOUR_TEXT_REGION 25 955 28 955 51 STRAND 33 955 38 COLOUR_TEXT_REGION 33 955 38 955 51 STRAND 42 955 42 COLOUR_TEXT_REGION 42 955 42 955 51 HELIX 4 955 6 COLOUR_TEXT_REGION 4 955 6 955 50