SILENT_MODE BLOCK_FILE jp_A88CyJm.concise.blc MAX_NSEQ 815 MAX_INPUT_LEN 817 OUTPUT_FILE jp_A88CyJm.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 179 804 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 805 179 814 H SPACE SUB_CHARS 1 805 179 814 E SPACE SUB_CHARS 1 805 179 814 - SPACE STRAND 4 808 8 COLOUR_TEXT_REGION 4 808 8 808 51 STRAND 36 808 39 COLOUR_TEXT_REGION 36 808 39 808 51 STRAND 44 808 47 COLOUR_TEXT_REGION 44 808 47 808 51 STRAND 73 808 76 COLOUR_TEXT_REGION 73 808 76 808 51 STRAND 99 808 104 COLOUR_TEXT_REGION 99 808 104 808 51 STRAND 125 808 129 COLOUR_TEXT_REGION 125 808 129 808 51 STRAND 133 808 138 COLOUR_TEXT_REGION 133 808 138 808 51 HELIX 20 808 29 COLOUR_TEXT_REGION 20 808 29 808 50 HELIX 52 808 66 COLOUR_TEXT_REGION 52 808 66 808 50 HELIX 78 808 87 COLOUR_TEXT_REGION 78 808 87 808 50 HELIX 110 808 118 COLOUR_TEXT_REGION 110 808 118 808 50 HELIX 149 808 154 COLOUR_TEXT_REGION 149 808 154 808 50 HELIX 163 808 177 COLOUR_TEXT_REGION 163 808 177 808 50 STRAND 4 813 8 COLOUR_TEXT_REGION 4 813 8 813 51 STRAND 36 813 39 COLOUR_TEXT_REGION 36 813 39 813 51 STRAND 44 813 47 COLOUR_TEXT_REGION 44 813 47 813 51 STRAND 73 813 76 COLOUR_TEXT_REGION 73 813 76 813 51 STRAND 99 813 104 COLOUR_TEXT_REGION 99 813 104 813 51 STRAND 125 813 130 COLOUR_TEXT_REGION 125 813 130 813 51 STRAND 133 813 138 COLOUR_TEXT_REGION 133 813 138 813 51 HELIX 20 813 29 COLOUR_TEXT_REGION 20 813 29 813 50 HELIX 52 813 66 COLOUR_TEXT_REGION 52 813 66 813 50 HELIX 78 813 87 COLOUR_TEXT_REGION 78 813 87 813 50 HELIX 111 813 117 COLOUR_TEXT_REGION 111 813 117 813 50 HELIX 151 813 154 COLOUR_TEXT_REGION 151 813 154 813 50 HELIX 163 813 177 COLOUR_TEXT_REGION 163 813 177 813 50 STRAND 3 814 9 COLOUR_TEXT_REGION 3 814 9 814 51 STRAND 36 814 39 COLOUR_TEXT_REGION 36 814 39 814 51 STRAND 44 814 47 COLOUR_TEXT_REGION 44 814 47 814 51 STRAND 73 814 75 COLOUR_TEXT_REGION 73 814 75 814 51 STRAND 98 814 104 COLOUR_TEXT_REGION 98 814 104 814 51 STRAND 126 814 129 COLOUR_TEXT_REGION 126 814 129 814 51 STRAND 133 814 138 COLOUR_TEXT_REGION 133 814 138 814 51 STRAND 163 814 164 COLOUR_TEXT_REGION 163 814 164 814 51 HELIX 20 814 29 COLOUR_TEXT_REGION 20 814 29 814 50 HELIX 52 814 66 COLOUR_TEXT_REGION 52 814 66 814 50 HELIX 78 814 87 COLOUR_TEXT_REGION 78 814 87 814 50 HELIX 110 814 118 COLOUR_TEXT_REGION 110 814 118 814 50 HELIX 148 814 156 COLOUR_TEXT_REGION 148 814 156 814 50 HELIX 165 814 177 COLOUR_TEXT_REGION 165 814 177 814 50