SILENT_MODE
BLOCK_FILE jp_yYiA7Jt.concise.blc
MAX_NSEQ 83
MAX_INPUT_LEN 85
OUTPUT_FILE jp_yYiA7Jt.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 124 72   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 73 124 82 H SPACE
SUB_CHARS 1 73 124 82 E SPACE
SUB_CHARS 1 73 124 82 - SPACE
STRAND 8 76 11
COLOUR_TEXT_REGION 8 76 11 76 51
STRAND 31 76 38
COLOUR_TEXT_REGION 31 76 38 76 51
STRAND 48 76 59
COLOUR_TEXT_REGION 48 76 59 76 51
STRAND 64 76 77
COLOUR_TEXT_REGION 64 76 77 76 51
STRAND 80 76 80
COLOUR_TEXT_REGION 80 76 80 76 51
HELIX 89 76 115
COLOUR_TEXT_REGION 89 76 115 76 50
STRAND 8 81 11
COLOUR_TEXT_REGION 8 81 11 81 51
STRAND 31 81 37
COLOUR_TEXT_REGION 31 81 37 81 51
STRAND 48 81 59
COLOUR_TEXT_REGION 48 81 59 81 51
STRAND 64 81 77
COLOUR_TEXT_REGION 64 81 77 81 51
STRAND 80 81 81
COLOUR_TEXT_REGION 80 81 81 81 51
HELIX 89 81 105
COLOUR_TEXT_REGION 89 81 105 81 50
HELIX 108 81 115
COLOUR_TEXT_REGION 108 81 115 81 50
STRAND 8 82 11
COLOUR_TEXT_REGION 8 82 11 82 51
STRAND 31 82 38
COLOUR_TEXT_REGION 31 82 38 82 51
STRAND 49 82 59
COLOUR_TEXT_REGION 49 82 59 82 51
STRAND 64 82 79
COLOUR_TEXT_REGION 64 82 79 82 51
HELIX 89 82 115
COLOUR_TEXT_REGION 89 82 115 82 50