SILENT_MODE BLOCK_FILE jp_uTwmiN0.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_uTwmiN0.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 149 16 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 17 149 26 H SPACE SUB_CHARS 1 17 149 26 E SPACE SUB_CHARS 1 17 149 26 - SPACE STRAND 19 20 26 COLOUR_TEXT_REGION 19 20 26 20 51 STRAND 63 20 65 COLOUR_TEXT_REGION 63 20 65 20 51 STRAND 101 20 102 COLOUR_TEXT_REGION 101 20 102 20 51 STRAND 129 20 133 COLOUR_TEXT_REGION 129 20 133 20 51 HELIX 4 20 11 COLOUR_TEXT_REGION 4 20 11 20 50 HELIX 30 20 42 COLOUR_TEXT_REGION 30 20 42 20 50 HELIX 55 20 60 COLOUR_TEXT_REGION 55 20 60 20 50 HELIX 78 20 93 COLOUR_TEXT_REGION 78 20 93 20 50 HELIX 107 20 118 COLOUR_TEXT_REGION 107 20 118 20 50 HELIX 138 20 147 COLOUR_TEXT_REGION 138 20 147 20 50 STRAND 19 25 26 COLOUR_TEXT_REGION 19 25 26 25 51 STRAND 51 25 52 COLOUR_TEXT_REGION 51 25 52 25 51 STRAND 63 25 65 COLOUR_TEXT_REGION 63 25 65 25 51 STRAND 129 25 133 COLOUR_TEXT_REGION 129 25 133 25 51 HELIX 5 25 11 COLOUR_TEXT_REGION 5 25 11 25 50 HELIX 30 25 42 COLOUR_TEXT_REGION 30 25 42 25 50 HELIX 57 25 61 COLOUR_TEXT_REGION 57 25 61 25 50 HELIX 79 25 93 COLOUR_TEXT_REGION 79 25 93 25 50 HELIX 107 25 118 COLOUR_TEXT_REGION 107 25 118 25 50 HELIX 121 25 124 COLOUR_TEXT_REGION 121 25 124 25 50 HELIX 138 25 147 COLOUR_TEXT_REGION 138 25 147 25 50 STRAND 19 26 26 COLOUR_TEXT_REGION 19 26 26 26 51 STRAND 63 26 64 COLOUR_TEXT_REGION 63 26 64 26 51 STRAND 100 26 104 COLOUR_TEXT_REGION 100 26 104 26 51 STRAND 107 26 111 COLOUR_TEXT_REGION 107 26 111 26 51 STRAND 116 26 118 COLOUR_TEXT_REGION 116 26 118 26 51 STRAND 129 26 133 COLOUR_TEXT_REGION 129 26 133 26 51 HELIX 3 26 11 COLOUR_TEXT_REGION 3 26 11 26 50 HELIX 30 26 42 COLOUR_TEXT_REGION 30 26 42 26 50 HELIX 55 26 60 COLOUR_TEXT_REGION 55 26 60 26 50 HELIX 78 26 93 COLOUR_TEXT_REGION 78 26 93 26 50 HELIX 115 26 115 COLOUR_TEXT_REGION 115 26 115 26 50 HELIX 138 26 146 COLOUR_TEXT_REGION 138 26 146 26 50