SILENT_MODE BLOCK_FILE jp_cEM_5Lr.concise.blc MAX_NSEQ 959 MAX_INPUT_LEN 961 OUTPUT_FILE jp_cEM_5Lr.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 139 948 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 949 139 958 H SPACE SUB_CHARS 1 949 139 958 E SPACE SUB_CHARS 1 949 139 958 - SPACE STRAND 0 952 6 COLOUR_TEXT_REGION 0 952 6 952 51 STRAND 13 952 18 COLOUR_TEXT_REGION 13 952 18 952 51 STRAND 76 952 84 COLOUR_TEXT_REGION 76 952 84 952 51 STRAND 89 952 98 COLOUR_TEXT_REGION 89 952 98 952 51 STRAND 105 952 113 COLOUR_TEXT_REGION 105 952 113 952 51 HELIX 29 952 42 COLOUR_TEXT_REGION 29 952 42 952 50 HELIX 67 952 71 COLOUR_TEXT_REGION 67 952 71 952 50 HELIX 117 952 134 COLOUR_TEXT_REGION 117 952 134 952 50 STRAND 0 957 6 COLOUR_TEXT_REGION 0 957 6 957 51 STRAND 14 957 18 COLOUR_TEXT_REGION 14 957 18 957 51 STRAND 46 957 47 COLOUR_TEXT_REGION 46 957 47 957 51 STRAND 76 957 84 COLOUR_TEXT_REGION 76 957 84 957 51 STRAND 90 957 100 COLOUR_TEXT_REGION 90 957 100 957 51 STRAND 105 957 113 COLOUR_TEXT_REGION 105 957 113 957 51 HELIX 30 957 42 COLOUR_TEXT_REGION 30 957 42 957 50 HELIX 67 957 71 COLOUR_TEXT_REGION 67 957 71 957 50 HELIX 118 957 135 COLOUR_TEXT_REGION 118 957 135 957 50 STRAND 2 958 5 COLOUR_TEXT_REGION 2 958 5 958 51 STRAND 13 958 18 COLOUR_TEXT_REGION 13 958 18 958 51 STRAND 76 958 84 COLOUR_TEXT_REGION 76 958 84 958 51 STRAND 89 958 98 COLOUR_TEXT_REGION 89 958 98 958 51 STRAND 105 958 108 COLOUR_TEXT_REGION 105 958 108 958 51 STRAND 111 958 113 COLOUR_TEXT_REGION 111 958 113 958 51 HELIX 29 958 42 COLOUR_TEXT_REGION 29 958 42 958 50 HELIX 67 958 71 COLOUR_TEXT_REGION 67 958 71 958 50 HELIX 116 958 134 COLOUR_TEXT_REGION 116 958 134 958 50