SILENT_MODE BLOCK_FILE jp_s8Gb5lX.concise.blc MAX_NSEQ 207 MAX_INPUT_LEN 209 OUTPUT_FILE jp_s8Gb5lX.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 99 196 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 197 99 206 H SPACE SUB_CHARS 1 197 99 206 E SPACE SUB_CHARS 1 197 99 206 - SPACE STRAND 10 200 15 COLOUR_TEXT_REGION 10 200 15 200 51 STRAND 19 200 24 COLOUR_TEXT_REGION 19 200 24 200 51 STRAND 30 200 34 COLOUR_TEXT_REGION 30 200 34 200 51 STRAND 46 200 51 COLOUR_TEXT_REGION 46 200 51 200 51 STRAND 63 200 66 COLOUR_TEXT_REGION 63 200 66 200 51 STRAND 71 200 77 COLOUR_TEXT_REGION 71 200 77 200 51 STRAND 95 200 96 COLOUR_TEXT_REGION 95 200 96 200 51 HELIX 87 200 92 COLOUR_TEXT_REGION 87 200 92 200 50 STRAND 10 205 15 COLOUR_TEXT_REGION 10 205 15 205 51 STRAND 19 205 24 COLOUR_TEXT_REGION 19 205 24 205 51 STRAND 30 205 34 COLOUR_TEXT_REGION 30 205 34 205 51 STRAND 45 205 51 COLOUR_TEXT_REGION 45 205 51 205 51 STRAND 64 205 66 COLOUR_TEXT_REGION 64 205 66 205 51 STRAND 72 205 77 COLOUR_TEXT_REGION 72 205 77 205 51 STRAND 94 205 97 COLOUR_TEXT_REGION 94 205 97 205 51 HELIX 87 205 92 COLOUR_TEXT_REGION 87 205 92 205 50 STRAND 9 206 15 COLOUR_TEXT_REGION 9 206 15 206 51 STRAND 19 206 24 COLOUR_TEXT_REGION 19 206 24 206 51 STRAND 30 206 34 COLOUR_TEXT_REGION 30 206 34 206 51 STRAND 47 206 51 COLOUR_TEXT_REGION 47 206 51 206 51 STRAND 62 206 67 COLOUR_TEXT_REGION 62 206 67 206 51 STRAND 70 206 78 COLOUR_TEXT_REGION 70 206 78 206 51 STRAND 82 206 85 COLOUR_TEXT_REGION 82 206 85 206 51 HELIX 52 206 53 COLOUR_TEXT_REGION 52 206 53 206 50 HELIX 89 206 91 COLOUR_TEXT_REGION 89 206 91 206 50