SILENT_MODE
BLOCK_FILE jp_nI6iBF6.concise.blc
MAX_NSEQ 166
MAX_INPUT_LEN 168
OUTPUT_FILE jp_nI6iBF6.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 147 155   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 156 147 165 H SPACE
SUB_CHARS 1 156 147 165 E SPACE
SUB_CHARS 1 156 147 165 - SPACE
STRAND 10 159 19
COLOUR_TEXT_REGION 10 159 19 159 51
STRAND 30 159 36
COLOUR_TEXT_REGION 30 159 36 159 51
STRAND 41 159 50
COLOUR_TEXT_REGION 41 159 50 159 51
STRAND 53 159 62
COLOUR_TEXT_REGION 53 159 62 159 51
STRAND 83 159 90
COLOUR_TEXT_REGION 83 159 90 159 51
STRAND 103 159 109
COLOUR_TEXT_REGION 103 159 109 159 51
STRAND 131 159 136
COLOUR_TEXT_REGION 131 159 136 159 51
HELIX 67 159 69
COLOUR_TEXT_REGION 67 159 69 159 50
STRAND 10 164 18
COLOUR_TEXT_REGION 10 164 18 164 51
STRAND 30 164 36
COLOUR_TEXT_REGION 30 164 36 164 51
STRAND 41 164 50
COLOUR_TEXT_REGION 41 164 50 164 51
STRAND 53 164 62
COLOUR_TEXT_REGION 53 164 62 164 51
STRAND 67 164 69
COLOUR_TEXT_REGION 67 164 69 164 51
STRAND 83 164 90
COLOUR_TEXT_REGION 83 164 90 164 51
STRAND 104 164 109
COLOUR_TEXT_REGION 104 164 109 164 51
STRAND 131 164 136
COLOUR_TEXT_REGION 131 164 136 164 51
STRAND 10 165 19
COLOUR_TEXT_REGION 10 165 19 165 51
STRAND 30 165 36
COLOUR_TEXT_REGION 30 165 36 165 51
STRAND 41 165 50
COLOUR_TEXT_REGION 41 165 50 165 51
STRAND 54 165 61
COLOUR_TEXT_REGION 54 165 61 165 51
STRAND 83 165 90
COLOUR_TEXT_REGION 83 165 90 165 51
STRAND 103 165 109
COLOUR_TEXT_REGION 103 165 109 165 51
STRAND 113 165 115
COLOUR_TEXT_REGION 113 165 115 165 51
STRAND 130 165 136
COLOUR_TEXT_REGION 130 165 136 165 51
STRAND 145 165 146
COLOUR_TEXT_REGION 145 165 146 165 51
HELIX 67 165 70
COLOUR_TEXT_REGION 67 165 70 165 50
HELIX 75 165 77
COLOUR_TEXT_REGION 75 165 77 165 50