SILENT_MODE
BLOCK_FILE jp_53QwMhd.concise.blc
MAX_NSEQ 161
MAX_INPUT_LEN 163
OUTPUT_FILE jp_53QwMhd.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 110 150   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 151 110 160 H SPACE
SUB_CHARS 1 151 110 160 E SPACE
SUB_CHARS 1 151 110 160 - SPACE
STRAND 8 154 10
COLOUR_TEXT_REGION 8 154 10 154 51
STRAND 16 154 24
COLOUR_TEXT_REGION 16 154 24 154 51
STRAND 29 154 33
COLOUR_TEXT_REGION 29 154 33 154 51
STRAND 58 154 62
COLOUR_TEXT_REGION 58 154 62 154 51
STRAND 66 154 70
COLOUR_TEXT_REGION 66 154 70 154 51
STRAND 75 154 82
COLOUR_TEXT_REGION 75 154 82 154 51
STRAND 105 154 108
COLOUR_TEXT_REGION 105 154 108 154 51
HELIX 40 154 54
COLOUR_TEXT_REGION 40 154 54 154 50
HELIX 90 154 100
COLOUR_TEXT_REGION 90 154 100 154 50
STRAND 8 159 10
COLOUR_TEXT_REGION 8 159 10 159 51
STRAND 16 159 24
COLOUR_TEXT_REGION 16 159 24 159 51
STRAND 29 159 34
COLOUR_TEXT_REGION 29 159 34 159 51
STRAND 58 159 62
COLOUR_TEXT_REGION 58 159 62 159 51
STRAND 66 159 70
COLOUR_TEXT_REGION 66 159 70 159 51
STRAND 75 159 82
COLOUR_TEXT_REGION 75 159 82 159 51
STRAND 105 159 108
COLOUR_TEXT_REGION 105 159 108 159 51
HELIX 41 159 54
COLOUR_TEXT_REGION 41 159 54 159 50
HELIX 90 159 100
COLOUR_TEXT_REGION 90 159 100 159 50
STRAND 7 160 10
COLOUR_TEXT_REGION 7 160 10 160 51
STRAND 16 160 24
COLOUR_TEXT_REGION 16 160 24 160 51
STRAND 29 160 33
COLOUR_TEXT_REGION 29 160 33 160 51
STRAND 58 160 63
COLOUR_TEXT_REGION 58 160 63 160 51
STRAND 66 160 69
COLOUR_TEXT_REGION 66 160 69 160 51
STRAND 75 160 81
COLOUR_TEXT_REGION 75 160 81 160 51
STRAND 105 160 108
COLOUR_TEXT_REGION 105 160 108 160 51
HELIX 39 160 54
COLOUR_TEXT_REGION 39 160 54 160 50
HELIX 90 160 100
COLOUR_TEXT_REGION 90 160 100 160 50