SILENT_MODE BLOCK_FILE jp_YnzDxXg.concise.blc MAX_NSEQ 587 MAX_INPUT_LEN 589 OUTPUT_FILE jp_YnzDxXg.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 130 576 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 577 130 586 H SPACE SUB_CHARS 1 577 130 586 E SPACE SUB_CHARS 1 577 130 586 - SPACE STRAND 3 580 8 COLOUR_TEXT_REGION 3 580 8 580 51 STRAND 34 580 39 COLOUR_TEXT_REGION 34 580 39 580 51 STRAND 75 580 78 COLOUR_TEXT_REGION 75 580 78 580 51 STRAND 108 580 109 COLOUR_TEXT_REGION 108 580 109 580 51 STRAND 124 580 127 COLOUR_TEXT_REGION 124 580 127 580 51 HELIX 16 580 29 COLOUR_TEXT_REGION 16 580 29 580 50 HELIX 43 580 48 COLOUR_TEXT_REGION 43 580 48 580 50 HELIX 60 580 70 COLOUR_TEXT_REGION 60 580 70 580 50 HELIX 79 580 84 COLOUR_TEXT_REGION 79 580 84 580 50 HELIX 92 580 93 COLOUR_TEXT_REGION 92 580 93 580 50 HELIX 112 580 122 COLOUR_TEXT_REGION 112 580 122 580 50 STRAND 3 585 8 COLOUR_TEXT_REGION 3 585 8 585 51 STRAND 34 585 39 COLOUR_TEXT_REGION 34 585 39 585 51 STRAND 75 585 78 COLOUR_TEXT_REGION 75 585 78 585 51 STRAND 108 585 109 COLOUR_TEXT_REGION 108 585 109 585 51 STRAND 124 585 127 COLOUR_TEXT_REGION 124 585 127 585 51 HELIX 17 585 29 COLOUR_TEXT_REGION 17 585 29 585 50 HELIX 43 585 47 COLOUR_TEXT_REGION 43 585 47 585 50 HELIX 60 585 70 COLOUR_TEXT_REGION 60 585 70 585 50 HELIX 79 585 84 COLOUR_TEXT_REGION 79 585 84 585 50 HELIX 112 585 123 COLOUR_TEXT_REGION 112 585 123 585 50 STRAND 3 586 8 COLOUR_TEXT_REGION 3 586 8 586 51 STRAND 34 586 34 COLOUR_TEXT_REGION 34 586 34 586 51 STRAND 75 586 78 COLOUR_TEXT_REGION 75 586 78 586 51 STRAND 108 586 109 COLOUR_TEXT_REGION 108 586 109 586 51 STRAND 125 586 127 COLOUR_TEXT_REGION 125 586 127 586 51 HELIX 15 586 29 COLOUR_TEXT_REGION 15 586 29 586 50 HELIX 35 586 49 COLOUR_TEXT_REGION 35 586 49 586 50 HELIX 60 586 70 COLOUR_TEXT_REGION 60 586 70 586 50 HELIX 79 586 84 COLOUR_TEXT_REGION 79 586 84 586 50 HELIX 90 586 96 COLOUR_TEXT_REGION 90 586 96 586 50 HELIX 112 586 121 COLOUR_TEXT_REGION 112 586 121 586 50