SILENT_MODE BLOCK_FILE jp_2xhDmSC.concise.blc MAX_NSEQ 988 MAX_INPUT_LEN 990 OUTPUT_FILE jp_2xhDmSC.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 165 977 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 978 165 987 H SPACE SUB_CHARS 1 978 165 987 E SPACE SUB_CHARS 1 978 165 987 - SPACE STRAND 5 981 8 COLOUR_TEXT_REGION 5 981 8 981 51 STRAND 26 981 30 COLOUR_TEXT_REGION 26 981 30 981 51 STRAND 35 981 38 COLOUR_TEXT_REGION 35 981 38 981 51 STRAND 41 981 44 COLOUR_TEXT_REGION 41 981 44 981 51 STRAND 72 981 77 COLOUR_TEXT_REGION 72 981 77 981 51 STRAND 150 981 154 COLOUR_TEXT_REGION 150 981 154 981 51 STRAND 162 981 163 COLOUR_TEXT_REGION 162 981 163 981 51 HELIX 51 981 66 COLOUR_TEXT_REGION 51 981 66 981 50 HELIX 84 981 107 COLOUR_TEXT_REGION 84 981 107 981 50 HELIX 113 981 122 COLOUR_TEXT_REGION 113 981 122 981 50 HELIX 136 981 146 COLOUR_TEXT_REGION 136 981 146 981 50 STRAND 6 986 8 COLOUR_TEXT_REGION 6 986 8 986 51 STRAND 26 986 30 COLOUR_TEXT_REGION 26 986 30 986 51 STRAND 35 986 38 COLOUR_TEXT_REGION 35 986 38 986 51 STRAND 41 986 44 COLOUR_TEXT_REGION 41 986 44 986 51 STRAND 72 986 77 COLOUR_TEXT_REGION 72 986 77 986 51 STRAND 150 986 154 COLOUR_TEXT_REGION 150 986 154 986 51 HELIX 52 986 66 COLOUR_TEXT_REGION 52 986 66 986 50 HELIX 84 986 97 COLOUR_TEXT_REGION 84 986 97 986 50 HELIX 102 986 110 COLOUR_TEXT_REGION 102 986 110 986 50 HELIX 113 986 122 COLOUR_TEXT_REGION 113 986 122 986 50 HELIX 136 986 147 COLOUR_TEXT_REGION 136 986 147 986 50 HELIX 162 986 162 COLOUR_TEXT_REGION 162 986 162 986 50 STRAND 5 987 8 COLOUR_TEXT_REGION 5 987 8 987 51 STRAND 26 987 31 COLOUR_TEXT_REGION 26 987 31 987 51 STRAND 35 987 38 COLOUR_TEXT_REGION 35 987 38 987 51 STRAND 40 987 44 COLOUR_TEXT_REGION 40 987 44 987 51 STRAND 72 987 77 COLOUR_TEXT_REGION 72 987 77 987 51 STRAND 150 987 153 COLOUR_TEXT_REGION 150 987 153 987 51 STRAND 162 987 163 COLOUR_TEXT_REGION 162 987 163 987 51 HELIX 51 987 67 COLOUR_TEXT_REGION 51 987 67 987 50 HELIX 84 987 106 COLOUR_TEXT_REGION 84 987 106 987 50 HELIX 113 987 123 COLOUR_TEXT_REGION 113 987 123 987 50 HELIX 136 987 146 COLOUR_TEXT_REGION 136 987 146 987 50