SILENT_MODE BLOCK_FILE jp_sk83YOf.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_sk83YOf.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 122 6 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 7 122 16 H SPACE SUB_CHARS 1 7 122 16 E SPACE SUB_CHARS 1 7 122 16 - SPACE STRAND 39 10 43 COLOUR_TEXT_REGION 39 10 43 10 51 STRAND 117 10 120 COLOUR_TEXT_REGION 117 10 120 10 51 HELIX 4 10 19 COLOUR_TEXT_REGION 4 10 19 10 50 HELIX 21 10 35 COLOUR_TEXT_REGION 21 10 35 10 50 HELIX 63 10 71 COLOUR_TEXT_REGION 63 10 71 10 50 HELIX 78 10 99 COLOUR_TEXT_REGION 78 10 99 10 50 HELIX 108 10 116 COLOUR_TEXT_REGION 108 10 116 10 50 STRAND 39 15 43 COLOUR_TEXT_REGION 39 15 43 15 51 STRAND 116 15 120 COLOUR_TEXT_REGION 116 15 120 15 51 HELIX 4 15 19 COLOUR_TEXT_REGION 4 15 19 15 50 HELIX 21 15 36 COLOUR_TEXT_REGION 21 15 36 15 50 HELIX 63 15 71 COLOUR_TEXT_REGION 63 15 71 15 50 HELIX 79 15 99 COLOUR_TEXT_REGION 79 15 99 15 50 HELIX 108 15 115 COLOUR_TEXT_REGION 108 15 115 15 50 STRAND 22 16 22 COLOUR_TEXT_REGION 22 16 22 16 51 STRAND 39 16 43 COLOUR_TEXT_REGION 39 16 43 16 51 STRAND 120 16 120 COLOUR_TEXT_REGION 120 16 120 16 51 HELIX 5 16 18 COLOUR_TEXT_REGION 5 16 18 16 50 HELIX 23 16 35 COLOUR_TEXT_REGION 23 16 35 16 50 HELIX 51 16 57 COLOUR_TEXT_REGION 51 16 57 16 50 HELIX 62 16 71 COLOUR_TEXT_REGION 62 16 71 16 50 HELIX 77 16 100 COLOUR_TEXT_REGION 77 16 100 16 50 HELIX 108 16 117 COLOUR_TEXT_REGION 108 16 117 16 50 HELIX 119 16 119 COLOUR_TEXT_REGION 119 16 119 16 50