QUERY               : MKPQLLALKQFVQTEFEKVDFETFRQNFNRCLEREQSTLLIYEDDDYDDQSFFLKPMLSDAFFISSEVVKQLDLPKGDVKSCCQSFYEALTLFISALAITKGVDVGRYHQQLGKRFGVLTVY : QUERY 
UniRef90_P47538     : MKPQLIAFKKFLQTEFQAVDFETFRINFNLCLKREQDNIVIYEDDDYDDQPFFFKPMLSDGFFIQTEVIKQLDYPKDSDQQCCQNFYEALIVFISALAITKGINPNRFHQRLVNRFAIHAVY : UniRef90_P47538
UniRef90_A0A024HXQ2 : -------LATVLNNEVNSLDFVILKDNYNRMFDRYIDTKIIYVDDDYEDVSFFSKRLEGDDFFLKAELLKQIQMTVDVIKPALNLLWDEFEILIRAIAVSKGLLLDNYKQRLHQ-------- : UniRef90_A0A024HXQ2

                    : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------12 :
OrigSeq             : MKPQLLALKQFVQTEFEKVDFETFRQNFNRCLEREQSTLLIYEDDDYDDQSFFLKPMLSDAFFISSEVVKQLDLPKGDVKSCCQSFYEALTLFISALAITKGVDVGRYHQQLGKRFGVLTVY : OrigSeq

Jnet                : ---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH---EEEEE-------------------HHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHEEEE-- : Jnet
jhmm                : ---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH--EEEEE-------------------HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHEEEEE-- : jhmm
jpssm               : ----HHHHHHHHHHHHHH---EHHHHHHHHHHHHH---EEEEE-------HHHHHHH----HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-HE-- : jpssm

Lupas 14            : -------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21            : -------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28            : -------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25             : -----BBBB-BB---B--B-B-BB---B--BB---B--BBBB-B--B--B-BBB--B---BBBB-B-BB--B-B----B--BB-BBB-BBBBBB-BBBBB-BB----B---BB--BBB--B- : Jnet_25
Jnet_5              : -------B---B-----------B---B--B--------BB-----------B----------B---B---B---------BB--B---B-BBB--B-B------------B---------- : Jnet_5
Jnet_0              : ---------------------------------------------------------------------------------BB--------------------------------------- : Jnet_0
Jnet Rel            : 99321789888865311017242689999988872065378743788775432222346761789999874378713199999999999999999987311578763789998872113148 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.