SILENT_MODE BLOCK_FILE jp_a1ic4nL.concise.blc MAX_NSEQ 852 MAX_INPUT_LEN 854 OUTPUT_FILE jp_a1ic4nL.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 178 841 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 842 178 851 H SPACE SUB_CHARS 1 842 178 851 E SPACE SUB_CHARS 1 842 178 851 - SPACE STRAND 5 845 12 COLOUR_TEXT_REGION 5 845 12 845 51 STRAND 19 845 25 COLOUR_TEXT_REGION 19 845 25 845 51 STRAND 50 845 54 COLOUR_TEXT_REGION 50 845 54 845 51 STRAND 90 845 95 COLOUR_TEXT_REGION 90 845 95 845 51 STRAND 101 845 110 COLOUR_TEXT_REGION 101 845 110 845 51 STRAND 120 845 124 COLOUR_TEXT_REGION 120 845 124 845 51 HELIX 31 845 44 COLOUR_TEXT_REGION 31 845 44 845 50 HELIX 77 845 80 COLOUR_TEXT_REGION 77 845 80 845 50 HELIX 138 845 148 COLOUR_TEXT_REGION 138 845 148 845 50 HELIX 153 845 162 COLOUR_TEXT_REGION 153 845 162 845 50 STRAND 5 850 12 COLOUR_TEXT_REGION 5 850 12 850 51 STRAND 19 850 25 COLOUR_TEXT_REGION 19 850 25 850 51 STRAND 50 850 54 COLOUR_TEXT_REGION 50 850 54 850 51 STRAND 78 850 80 COLOUR_TEXT_REGION 78 850 80 850 51 STRAND 90 850 95 COLOUR_TEXT_REGION 90 850 95 850 51 STRAND 102 850 110 COLOUR_TEXT_REGION 102 850 110 850 51 STRAND 120 850 124 COLOUR_TEXT_REGION 120 850 124 850 51 HELIX 31 850 42 COLOUR_TEXT_REGION 31 850 42 850 50 HELIX 138 850 148 COLOUR_TEXT_REGION 138 850 148 850 50 HELIX 153 850 162 COLOUR_TEXT_REGION 153 850 162 850 50 HELIX 173 850 174 COLOUR_TEXT_REGION 173 850 174 850 50 STRAND 5 851 12 COLOUR_TEXT_REGION 5 851 12 851 51 STRAND 19 851 25 COLOUR_TEXT_REGION 19 851 25 851 51 STRAND 52 851 55 COLOUR_TEXT_REGION 52 851 55 851 51 STRAND 90 851 95 COLOUR_TEXT_REGION 90 851 95 851 51 STRAND 101 851 108 COLOUR_TEXT_REGION 101 851 108 851 51 STRAND 120 851 124 COLOUR_TEXT_REGION 120 851 124 851 51 HELIX 31 851 51 COLOUR_TEXT_REGION 31 851 51 851 50 HELIX 76 851 82 COLOUR_TEXT_REGION 76 851 82 851 50 HELIX 140 851 148 COLOUR_TEXT_REGION 140 851 148 851 50 HELIX 153 851 161 COLOUR_TEXT_REGION 153 851 161 851 50