SILENT_MODE
BLOCK_FILE jp_hHqirZe.concise.blc
MAX_NSEQ 144
MAX_INPUT_LEN 146
OUTPUT_FILE jp_hHqirZe.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 178 133   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 134 178 143 H SPACE
SUB_CHARS 1 134 178 143 E SPACE
SUB_CHARS 1 134 178 143 - SPACE
STRAND 3 137 9
COLOUR_TEXT_REGION 3 137 9 137 51
STRAND 26 137 32
COLOUR_TEXT_REGION 26 137 32 137 51
STRAND 36 137 43
COLOUR_TEXT_REGION 36 137 43 137 51
STRAND 53 137 57
COLOUR_TEXT_REGION 53 137 57 137 51
STRAND 64 137 74
COLOUR_TEXT_REGION 64 137 74 137 51
STRAND 172 137 176
COLOUR_TEXT_REGION 172 137 176 137 51
HELIX 86 137 95
COLOUR_TEXT_REGION 86 137 95 137 50
HELIX 112 137 118
COLOUR_TEXT_REGION 112 137 118 137 50
HELIX 123 137 134
COLOUR_TEXT_REGION 123 137 134 137 50
HELIX 141 137 147
COLOUR_TEXT_REGION 141 137 147 137 50
HELIX 154 137 166
COLOUR_TEXT_REGION 154 137 166 137 50
STRAND 3 142 8
COLOUR_TEXT_REGION 3 142 8 142 51
STRAND 26 142 32
COLOUR_TEXT_REGION 26 142 32 142 51
STRAND 36 142 43
COLOUR_TEXT_REGION 36 142 43 142 51
STRAND 53 142 57
COLOUR_TEXT_REGION 53 142 57 142 51
STRAND 64 142 68
COLOUR_TEXT_REGION 64 142 68 142 51
STRAND 72 142 75
COLOUR_TEXT_REGION 72 142 75 142 51
STRAND 104 142 105
COLOUR_TEXT_REGION 104 142 105 142 51
STRAND 172 142 176
COLOUR_TEXT_REGION 172 142 176 142 51
HELIX 86 142 93
COLOUR_TEXT_REGION 86 142 93 142 50
HELIX 112 142 117
COLOUR_TEXT_REGION 112 142 117 142 50
HELIX 123 142 134
COLOUR_TEXT_REGION 123 142 134 142 50
HELIX 141 142 147
COLOUR_TEXT_REGION 141 142 147 142 50
HELIX 154 142 166
COLOUR_TEXT_REGION 154 142 166 142 50
STRAND 4 143 10
COLOUR_TEXT_REGION 4 143 10 143 51
STRAND 27 143 32
COLOUR_TEXT_REGION 27 143 32 143 51
STRAND 37 143 43
COLOUR_TEXT_REGION 37 143 43 143 51
STRAND 51 143 57
COLOUR_TEXT_REGION 51 143 57 143 51
STRAND 64 143 74
COLOUR_TEXT_REGION 64 143 74 143 51
STRAND 173 143 177
COLOUR_TEXT_REGION 173 143 177 143 51
HELIX 85 143 98
COLOUR_TEXT_REGION 85 143 98 143 50
HELIX 112 143 120
COLOUR_TEXT_REGION 112 143 120 143 50
HELIX 123 143 135
COLOUR_TEXT_REGION 123 143 135 143 50
HELIX 141 143 147
COLOUR_TEXT_REGION 141 143 147 143 50
HELIX 154 143 166
COLOUR_TEXT_REGION 154 143 166 143 50