QUERY : NSVSVDLPGSMKVLVSKSSNADGKYDLIATVDALELSGTSDKNNGSGVLEGVKADASKVKLTISDDLGQTTLEVFKSDGSTLVSKKVTSKDKIIIIIKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTSSNTITVQQYDSNGTSLEGSAVEITKLDEIKNALK : QUERY
UniRef90_C0RC24 : NSTSVDVPGELKVLVSKEKDKDGKYSLMATVDKLELKGTSDKNDGSGVLEGVKADKSKVKLTISDHLSKTTFEVFKEDGKTLVSRNVNSKDKSSTKEKFNEKGELSEKTLVRANGTKLEYTEIKSDGTGKAKEVLKDFTLEGTLANEKATLTVKEGTVTLSKNIDKSGEVTVALNDTDSTAATKKTGAWDSKTSTLTITVNSKKTKDLVFTKQDTITVQKYDSAGTTLEGSAVEIKTLDELKNALK : UniRef90_C0RC24
UniRef90_P0A3N6 : NSASVDLPGEMKVLVSKEKDKDGKYSLKATVDKIELKGTSDKDNGSGVLEGTKDDKSKAKLTIADDLSKTTFELFKEDGKTLVSRKVSSKDKTSTDEMFNEKGELSAKTMTRENGTKLEYTEMKSDGTGKAKEVLKNFTLEGKVANDKVTLEVKEGTVTLSKEIAKSGEVTVALNDTNTTQATKKTGAWDSKTSTLTISVNSKKTTQLVFTKQDTITVQKYDSAGTNLEGTAVEIKTLDELKNALK : UniRef90_P0A3N6
UniRef90_Q9R2W5 : NSTSVDLPGGMKVLVSKEKDKDGKYTLMATVDKLELKGTSDKNNGSGTLEGAKTDKSKVKLTISDDLSKTTLETLKEDGKTLVSRKVNSKDMPSEEEKFNDKGELAEKVILRGNGTRLEYTEIKSDGTGKAKEVLKNFTLEGTLANDKTTLTVKEGTVALNKHIEKSGKITVDLNDSSTTASTKKTAEWDPNNSTLTISVNSKKTTQLVFTKQDTITMQKYNTNGDALEGVAVEITTLDALKNALK : UniRef90_Q9R2W5
UniRef90_B2ZBE1 : NSVSVDLPGEMKVLVSKEKDKDGKYSLMATVDKLELKGTSDKSNGSGVLEGVKADKSKAKLTIADDLSQTKFEIFKEDGTTLVSRKVTLKDKSSTEEKFGEKGAVTEKVMTRKDGTRLEHTNIKSNGSGKAKEVLKGFALEGTLAAGKTTLTVTEGTVTLNKHISKSGEITVDLVDTETTSANKKTGEWEAGTSTLKISKNSKKTKQLVFTKENTITVQNYDSAGTNLEGTAVEITTLDDLKKVLK : UniRef90_B2ZBE1
UniRef90_Q6RD73 : NSVSVDLPGEMKVLVSKEKDKDGKYSLMATVDKLELKGTSDKSNGSGVLEGVKTDKSKAKLTIADDLSQTKFEIFKEDGTTLVSRKVTLKDKSSTEEKFNAKGELSEKTIVRANGTRLEYTDIKN-GAGKAKEVLKDFALEGTLTAGKTTLTIQEGTVTLKKEIEKAGTVKLFLDDT-TSGSTKKTAVWSDTSKTLTVSADSKKIKDFVFLTDGTITVQNYDTAGTTLAGTATEIKDLTALKTALK : UniRef90_Q6RD73
UniRef90_C0R854 : NSASVDLPGEMKVLVSKEKDKDGKYSLVATVDKVELKGTSDKNNGSGTLEGVKDDKSKVKLTISDDLGETKLETFKEDG-TLVSRKVNFKDKSFTEEKFNEKGEVSEKILTRSNGTTLEYSQMDAENATKAVETLKGIKLPGNLVGGKTTLKITEGTVTLSKHIAKSGEVTVEINDTSSTPNTKKTGKWDARNSTLTIIVDSKNKTKLVFTKQDTITVQSYNPAGNKLEGTAVEIKTLQELKNALK : UniRef90_C0R854
UniRef90_Q04968 : NSVSVDVPGGMKVLVSKEKNKDGKYDLMATVDNVDLKGTSDKNNGSGILEGVKADKSKVKLTVADDLSKTTLEVLKEDG-TVVSRKVTSKDKSTTEAKFNEKGELSEKTMTRANGTTLEYSQMTNDNAAKAVETLKGIKFEGNLASGKTAVEIKEGTVTLKREIDKNGKVTVSLNDTAS--GSKKTASWQESTSTLTISANSKKTKDLVFLTNGTITVQNYDSAGTKLEGSAAEIKKLDELKNALR : UniRef90_Q04968
UniRef90_Q9R404 : NSVSVDLPGEMKVFVSKEKDKDGKYSLMATIDKLELKGTSDKNNGSGVLEGVKADKSKVKLTISDDLDETKLETFKEDGTTLVSRKVTLKDKSSTEEKFDAKGAVTEKVITRKDGTRLEYTGMKSDGSGKAKEVLKNFALDGTLTSGKTTLTVKQDTVTLTKEIDKDGKVKISLDDTASSS--KKTGAWVDATNTLTISANSKKTKDLVFTKENTITVQSYDSGGTTLTGKAVEITTLENLKNALK : UniRef90_Q9R404
UniRef90_G0APD9 : ---TVSLFSGNEIFLSKEKNSSGKYDLRTIIDQVELKGTSDKNNGSGSLEGVKADKSKVKLTVSDDLNTITVETFDSSGKK-ISSKVTVKHGSITEETL-KANKLDSKKLTRSNETTLEYSQMDADNATKAVETLKGIKLEGNLVGGKTTLKLLEGTVTLTREIEKDGKVKVYLNDTA-SGSTKKTATWQETTSTLTISADSKKTKDLVFLTDGTITVQKYDSAGTALEGKPAEIKDLAELKGALK : UniRef90_G0APD9
UniRef90_O31371 : ----VSLFNGTKIFVSKEKNTAGKYELRAMVDTVELKGTSDKNNGSGTLEGEKSDKSKAKLTISEDLNTITVETHDSS-NTKVARKVFFKTGSLETEETYQTGKLSTKKITRTNGTTLEYSDMTNDNATKAVETLKGIMLEGNLVGGKTSVEIKEGTVTLKKEIEKAGTVKLFLDDT-SSGSTKKTAVWSDTSNTLTISANSKKTTQLVFTKENTITVQKYDSAGTNLEGKAVEIQTLDELKNALK : UniRef90_O31371
UniRef90_O50612 : -----------------------KYDLIATVDKLELKGTSDKNNGSGTLEGEKTDKSKAKLTIADDLSQTKFEIFKEDGTTLVSRKVTLKDKSSTEEKFNAKGELSEKTIVRANGTRLEYTDIKN-GTGKAKEVLKDFALEGTLTADKTTLKVTEGHCYFKRNISKIWRNKLHLMTLKLSMLTKKTGEWDSGTSTLKISKNNKKTKQLVFTKENTITVQNYDSAGTNLEGSAVEITTLNALKDALK : UniRef90_O50612
UniRef90_A8D057 : --TSVDLPSGEKVLVSKEKNKDGKYELMATVDNLELKGTSDKNDGSGTLEGVKDDKSKVKLTVSDDLSETKLETLKEDG-TPVSTKTTSKDKSVTEEKFNEKGELTDKIITRANGTKLELTEITKEGKAKVKETLKHLTLEGTLADKKITLAVKEGTVTLSKEIDENEKVTVSVKDTSTTDATKKTGAWDENTSTLTITVNSKKTKDLVFLADGTITKQSYNTNGDKLEGQAEEVKTLDDLKTALK : UniRef90_A8D057
UniRef90_Q6ASL0 : ---TVKLFNNNEIFISKEKNKDDKYELRSIVDKVELKGLSEKNTGAGKLEGLKADKSKVTMLVSDDLNTVTIETYDTNNRKVLS-QVAKKQGSLTEETY-KAGKLSAKKITRSNDTTIEYTEMDADNASKAVETLKGITLEGSLVGGKTTLTIKEGTVTLKKEIEKAGTVKLFLDDT-TSGTTKKTAVWNDTSNTLTVSADSKKIKDFVFLTDGTITVQNYDTAGTTLEGKATEIKDLTALKAALK : UniRef90_Q6ASL0
UniRef90_C0RC25 : --TAVSLFNGNEIFISKEKNSAGKYDLRARVDLVELKGTSDKNTGAGKLEGLKADKSKVTMTISDDLNTVTVETYDASNKKTGSEVV--KKQGSVIKESYKANKLDSKKLTRSNDTTLEYSQMDEENATKAVETLKGIKFEGNLVGGKTTVKITEGTVTLKREIDKDGKIKVFLDDTA-TDNTKKTGKWNENNNTLTVTVDSKKTKDLVFSDDGTITVQKYNTAGTNLEGNPSEIKDLAALKGALK : UniRef90_C0RC25
UniRef90_O50613 : -----------------------KYDLIATVDKLELKGTSDKNNGSGTLEGEKTDKSKAKLTIANDLSQTKFEIFKEDGTTLVSRKVTLKDKSSTEEKFNAKGELSEKTIVRANGTRLKYTDIKNDGSGKAKEVLKDFALEGTLTAGKTRLIIRRATCYFKKRKLKKLEPVKTLFRMTLRVVVLKKQLY--GTILLTLVLTAKKIKDFVFLTDGTITVLNYNTAGTKLEGSAVEITTLNALKDALK : UniRef90_O50613
UniRef90_O24798 : ---TVKLFNDTEIFISKEKNNAGKYELRAMVDTVELKGFSEKNTGAGNLEGLKADKSKVTMLVSDDLNTITIETYNTSNKK-VSSQVVKKQGLLTEESY-KADKLDSKKLTRTNGTTLEYSDMDAANATKAVETLKGIEFEGNLVGGKTTLNIKEGTVTLTREIDKDDKLKIYLNDTASSS--KKTASWND-TDTLTISAEGKKTKDLVFRTDGTITVQNYDSAGTKLEGTATEIKDLEALKAALK : UniRef90_O24798
UniRef90_C0R855 : ---AVSLFNGYTIFVSKEKNTSGKYDLRAVVDQFELKGTSDKDNGSGTLKGSKADKTKMTISITEDLNSVTVETFD-SGNKKVSSKVVKKHGLLTEENF-KADKLDSQKLTRSNGTTLEYSQMDAENATKAVETLKGIKLEGNLVGGKTTLKITVGTVTLTREIEKDGRIKLFLNDTDSSP-TKKTAKWEDSTNTLTITSNRKKTKDLVFLIDGTITVQNYNSAG-KLDGQASEIKSLGELQGALK : UniRef90_C0R855
UniRef90_O50615 : -----------------------KYDLIATVDKLELKGTSDKNNGSGTLEGEKTDKSKAKLTIAEDLSQTTFEIFKEDGKTLVSRKVNSKDKSSTEEKFNDKGKLSEKVVTRANGTRLEYHQYQNDGSGKKKEVLKGLTLNSNCWTGETKLTVKGGHCYFKKTFQKSGEITVALDDTDSSG-NKKSGTWDSGTSTLTISKNRQKTKQLVFTKENTITVQNYDSAGTNLEGKAVEITTLKELKDALK : UniRef90_O50615
UniRef90_Q9REH5 : -SSSVELSSGEKVLVSKEKNKDGKYELMATVGNLELKGTSDKNDGSGTLEGVKDDNSKVKLTVSDDL-ETTLEITKADGKK-VSKKTTAKDKSSTEEIFDANGEVTEKTITRANGTKLELTEMTKEGKGKAKEALKNFTLEGAVENNKIKLEVKEGTVTLAKEIDEDGKVTISVEDTNTTQASKKTGDWDENTSTLTITVNSKKTKDLVFTKEGTITQQSYNTNGDKLEGQAEEIKTLDDLKTALK : UniRef90_Q9REH5
UniRef90_O50611 : -----------------------KYDLIATVDKLELKGTSDKSNGSGVLEGVKTDKSKAKLTIADDLSQTKFEIFKEDGTTLVSRKVTLKDKSSTEEKFNAKGELSEKTIVRANGTRLEYTDIKN-GTGKAKEVFKRLLLEGTLTAGKTTFNYQEGTVTFKKRKKKAGTVKLSLDDTAEWVVLKKTAVWSDTSNTLTVSADSKKTKDFVFLTDGTITVQNYDTAGTTLAGKATEIKDLTALKTALK : UniRef90_O50611
UniRef90_D0VWU8 : NSVSVDLPGSMKVLVSKSSNADGKYDLIATVDASKVKLTISDDLGQTTLEVFKSDGSTLKKVTSKDKSSTTYELFNEKGEELSEKKITRADKSSTYELFNEKGELSLKYITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTSSNTITVQQYDSNGTSLEGSAVEITKLDEIKNALK : UniRef90_D0VWU8
UniRef90_O24792 : ---SVSLFNGTKIFVSKEKNKAGKYELRATVDTVELKGVSDKNNGSGKLEGVKSDQSKVTMSITDDLNTVTVETHD-SGNKKVSSQVFKKQGLLTEESY-KANKLDSKKLTRTNGTTLEYSGMDTENATKATETLKGIKLEGNLVGGKTTLKITEGTVTLTREIEKDEKVKLYLNDTA-SGSTKKTAIWSESTSTLTISADSKKTKDIVFLTDGTI------------------------------ : UniRef90_O24792
UniRef90_F8TT56 : NSVSVDLPGEIKVLVSKEKNKDGKYSLMATVDKLELKGTSDKSNGSGVLEGVKADKSKAKLTIADDLSQTKFEIFKEDGKTLVSKKVTLKDKSSTEEKFGEKGAVTEKVMTRKDGTRLEYTEIK----GKAKEVLKGFTLEGN----KTTLTVKEGTVTLNKHISKSGDITADLVDT----ANKKTGEWDSGTSTLTI------------------------------------------------ : UniRef90_F8TT56
UniRef90_F8TT61 : NSVSVNLPGEMKVLVSKEKDKDGKYSLMATVGKLELKGTSDKNNGSGTLEGEKTDKSKAKLTIADDLSQTKFEIFKEDGKTLVSRKVTLKDKSSIGEKFNAKGELSEKTIVRANGTRLEYTDIK----GKAKEVLKDFALEGT----KTTLTIQEGTVTLKKEIEKAGTVKLFLDDTR----TKKTAVWSDTSSTLTI------------------------------------------------ : UniRef90_F8TT61
UniRef90_Q8L382 : ---------------------DGKYDLIATVDKLELKGTSDTNNGSGVLEGVKADKSKVKLTISDDLGQTTLEVFKEDGKTLVSKKVTSKDKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTI------------------------------------------------ : UniRef90_Q8L382
UniRef90_B7SAW7 : ----------------------------------ELKGTSDKNNGSGVLEGVKADKSKVKLTVSEDLSTTTLEVLKEDGKTFVSKKTTSKDKSSTEEKFNDKGELSEKIMVRANGTKLEYTEIKNDGSGKAKETLKEYVLEGTLTAEKATLTVKQGTVTLSKHISKSGEVTAELNDTDSAQATKKTGKWDAGTSTLTISVNSKKTKDLVFTKQDTITVQQY------------------------- : UniRef90_B7SAW7
UniRef90_D6P4J9 : -----------------------------TVDKIELKGTSDKDNGSGVLEGTKDDKSKAKLTIADDLSKTTFELFKEDGKTLVSRKVSSKDKTSTDEMFNEKGELSAKTMTRENGTKLEYTEMKSDGTGKAKEVLKNFTLEGKVANDKVTLEVKEGTVTLSKEIAKSGEXTVALNDTNTTQATKKTGAW--------------------------------------------------------- : UniRef90_D6P4J9
UniRef90_G8W6U4 : ------------------------------------------------------------MSITDDLNTITVETYDSS-NTKVASKVFKKKGSLTEETEYKTGKLSTKKITRTNGTTLEYSDMTNENATKAVETLKGIMLEGNLVGGKTSVEIKEGTVTLKKEIEKAGTVKLFLEDSA-SGSTKKTAAWDDTSNTLTVSAESKKIKDFVFLTDGTITVQNYDTAGTKLVGTAAEIKDLTALKTALK : UniRef90_G8W6U4
UniRef90_Q45006 : NSVSVDLPGEMNVLVSKEKNKDGKYDLIATVDKLELKGTSDKNNGSGVLEGVKADKSKVKLTISDDLGQTTLEVFKEDGKTLVSKKATSKDKSSTEEKFNEKGEVSEKIITRADGTRLEYTEIKSDGSGKAK------------------------------------------------------------------------------------------------------------------ : UniRef90_Q45006
UniRef90_D3U2C6 : -SASVDLPGEMKVLVSKEKDKDGKYSLKATVDKIELKGTSDKDNGSGVLEGTKDDKSKAKLTIADDLSKTTFELFKEDGKTLVSRKVSSRDKTSTDEMFNEKGELSAKTMTRENGTKLEYTEMKSDGTGKAKEVLKNF------------------------------------------------------------------------------------------------------------ : UniRef90_D3U2C6
UniRef90_Q6PQL7 : ---SVTLFSGNEIFVSKEKNSSGKYDLRTTINQVELKGTSDKNNGSGSLEGVKADKSKVKLIVSDDLNTVTVETFDSSGKK-DSSKVTVKHGSITEDTF-KANKLDSKKLTRSNGTMLEYSQMDADNATKAVETLKN------------------------------------------------------------------------------------------------------------- : UniRef90_Q6PQL7
UniRef90_K4HV48 : ------------------------------------------------------DKSKVTMTISDDLNTVTVETYDASNKKTGSEVV--KKQGSVIKESYKANKLDSKKLTRSNDTTLEYSQMDEENATKAVETLKGIRFEGNLVGGKTTVKITEGTVTLKREIDKDGKIKVFLDDTA-TDNTKKTGKWSENNNTLTVTVDSKKTKDLV------------------------------------- : UniRef90_K4HV48
UniRef90_Q6ZYT2 : -SSSVELSSGEKVLVSKEKNKDGKYELMATVGNVELKGTSDKNDGSGTLEGVKDDNSKVKLTVSDNL-ETTLEITKADGKK-VSTKTTAKDKSSTEEIFDANGEVTEKTITRANGTKLELTEMTKEGKGKAKEVLK-------------------------------------------------------------------------------------------------------------- : UniRef90_Q6ZYT2
: 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211-------221-------231-------241--- :
OrigSeq : NSVSVDLPGSMKVLVSKSSNADGKYDLIATVDALELSGTSDKNNGSGVLEGVKADASKVKLTISDDLGQTTLEVFKSDGSTLVSKKVTSKDKIIIIIKFNEKGEVSEKIITRADGTRLEYTGIKSDGSGKAKEVLKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATKKTAAWNSGTSTLTITVNSKKTKDLVFTSSNTITVQQYDSNGTSLEGSAVEITKLDEIKNALK : OrigSeq
Jnet : ---EEE-----EEEEEE-------EEEEEHHHHHEE----------EEEEEE-----EEEEEE------EEEEEE-----EEEEEEEE-------HHHHHH------EEEEE----EEEEEE---------HHHHH-EEEE-------EEEEEEEEEEEEE-E------EEEEE--------------------EEEEEE-----EEEEEE----EEEEE-------------HHHHHHHHHHH-- : Jnet
jhmm : ---EEE-----EEEEE--------EEEEHHHHHHH------------EEEE-------EEEEE------EEEEEEE-----HHHHHHH-------HHHHH-------EEEE-----EEEEEE---------HHHHHHEEE--------EEEEE----EEEE--------EEEEE---------------------EEEE-------EEEEE----EEEE--------------HHHHHHHHHHH-- : jhmm
jpssm : --EEEE-----EEEEEE-------EEEEEE--EEEEEE--------EEEEEE-----EEEEEEE-----EEEEEE-----EEEEEEEE------HHHHHHH------EEEEE----EEEEE---------EEHH---EEEEEEE----EEEEEEEEEEEEEEEE-----EEEEEE-----------EEE-----EEEEEE----EEEEEE-----EEEEEE----------EEEE--HHHHHHH-- : jpssm
Lupas 14 : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 14
Lupas 21 : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 21
Lupas 28 : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Lupas 28
Jnet_25 : ----B-B---B-BBBB--------B-BB-BB--B-B-B-B----B-B-B-B-------B-B-B---B--BBB-BB-------B---B-----------B-----B----B-----B-B-B--B-------B--BB--B-B-B-B----B-B-B---BB-B---B-----B-B-B--------------B-----BB-BBB----B--BBBB---BBBB--B------B---B--B--B--B---B- : Jnet_25
Jnet_5 : ------------B-B-----------B---B---------------------------B---B----------------------------------------------------------------------------B----------B-B----B-B-------------B---------------------B-B------------------------------------------B----- : Jnet_5
Jnet_0 : ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ : Jnet_0
Jnet Rel : 971886388845888813788875156720102011135778777418898247875078887158884589986078850443211137887511112300578735788148855898517788775223112104781232578458999200388740115788458886157765566663102058851899814760317786178846888235777752353201334689888508 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.