SILENT_MODE BLOCK_FILE jp_bgkVJVR.concise.blc MAX_NSEQ 108 MAX_INPUT_LEN 110 OUTPUT_FILE jp_bgkVJVR.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 368 97 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 98 368 107 H SPACE SUB_CHARS 1 98 368 107 E SPACE SUB_CHARS 1 98 368 107 - SPACE STRAND 3 101 8 COLOUR_TEXT_REGION 3 101 8 101 51 STRAND 17 101 22 COLOUR_TEXT_REGION 17 101 22 101 51 STRAND 25 101 28 COLOUR_TEXT_REGION 25 101 28 101 51 STRAND 44 101 50 COLOUR_TEXT_REGION 44 101 50 101 51 STRAND 85 101 89 COLOUR_TEXT_REGION 85 101 89 101 51 STRAND 93 101 95 COLOUR_TEXT_REGION 93 101 95 101 51 STRAND 121 101 127 COLOUR_TEXT_REGION 121 101 127 101 51 STRAND 157 101 163 COLOUR_TEXT_REGION 157 101 163 101 51 STRAND 173 101 184 COLOUR_TEXT_REGION 173 101 184 101 51 STRAND 251 101 255 COLOUR_TEXT_REGION 251 101 255 101 51 STRAND 260 101 263 COLOUR_TEXT_REGION 260 101 263 101 51 STRAND 343 101 348 COLOUR_TEXT_REGION 343 101 348 101 51 STRAND 352 101 357 COLOUR_TEXT_REGION 352 101 357 101 51 HELIX 33 101 39 COLOUR_TEXT_REGION 33 101 39 101 50 HELIX 64 101 78 COLOUR_TEXT_REGION 64 101 78 101 50 HELIX 99 101 114 COLOUR_TEXT_REGION 99 101 114 101 50 HELIX 132 101 151 COLOUR_TEXT_REGION 132 101 151 101 50 HELIX 207 101 209 COLOUR_TEXT_REGION 207 101 209 101 50 HELIX 214 101 223 COLOUR_TEXT_REGION 214 101 223 101 50 HELIX 229 101 237 COLOUR_TEXT_REGION 229 101 237 101 50 HELIX 244 101 244 COLOUR_TEXT_REGION 244 101 244 101 50 HELIX 268 101 281 COLOUR_TEXT_REGION 268 101 281 101 50 HELIX 288 101 298 COLOUR_TEXT_REGION 288 101 298 101 50 HELIX 304 101 317 COLOUR_TEXT_REGION 304 101 317 101 50 HELIX 328 101 336 COLOUR_TEXT_REGION 328 101 336 101 50 HELIX 361 101 366 COLOUR_TEXT_REGION 361 101 366 101 50 STRAND 3 106 8 COLOUR_TEXT_REGION 3 106 8 106 51 STRAND 17 106 22 COLOUR_TEXT_REGION 17 106 22 106 51 STRAND 25 106 28 COLOUR_TEXT_REGION 25 106 28 106 51 STRAND 44 106 49 COLOUR_TEXT_REGION 44 106 49 106 51 STRAND 85 106 89 COLOUR_TEXT_REGION 85 106 89 106 51 STRAND 93 106 95 COLOUR_TEXT_REGION 93 106 95 106 51 STRAND 121 106 127 COLOUR_TEXT_REGION 121 106 127 106 51 STRAND 157 106 163 COLOUR_TEXT_REGION 157 106 163 106 51 STRAND 173 106 184 COLOUR_TEXT_REGION 173 106 184 106 51 STRAND 252 106 255 COLOUR_TEXT_REGION 252 106 255 106 51 STRAND 260 106 263 COLOUR_TEXT_REGION 260 106 263 106 51 STRAND 343 106 348 COLOUR_TEXT_REGION 343 106 348 106 51 STRAND 352 106 357 COLOUR_TEXT_REGION 352 106 357 106 51 HELIX 33 106 38 COLOUR_TEXT_REGION 33 106 38 106 50 HELIX 64 106 78 COLOUR_TEXT_REGION 64 106 78 106 50 HELIX 99 106 114 COLOUR_TEXT_REGION 99 106 114 106 50 HELIX 132 106 151 COLOUR_TEXT_REGION 132 106 151 106 50 HELIX 213 106 223 COLOUR_TEXT_REGION 213 106 223 106 50 HELIX 228 106 236 COLOUR_TEXT_REGION 228 106 236 106 50 HELIX 268 106 281 COLOUR_TEXT_REGION 268 106 281 106 50 HELIX 288 106 297 COLOUR_TEXT_REGION 288 106 297 106 50 HELIX 303 106 316 COLOUR_TEXT_REGION 303 106 316 106 50 HELIX 331 106 335 COLOUR_TEXT_REGION 331 106 335 106 50 HELIX 361 106 366 COLOUR_TEXT_REGION 361 106 366 106 50 STRAND 3 107 8 COLOUR_TEXT_REGION 3 107 8 107 51 STRAND 17 107 22 COLOUR_TEXT_REGION 17 107 22 107 51 STRAND 25 107 28 COLOUR_TEXT_REGION 25 107 28 107 51 STRAND 44 107 50 COLOUR_TEXT_REGION 44 107 50 107 51 STRAND 85 107 88 COLOUR_TEXT_REGION 85 107 88 107 51 STRAND 93 107 95 COLOUR_TEXT_REGION 93 107 95 107 51 STRAND 121 107 126 COLOUR_TEXT_REGION 121 107 126 107 51 STRAND 156 107 163 COLOUR_TEXT_REGION 156 107 163 107 51 STRAND 173 107 185 COLOUR_TEXT_REGION 173 107 185 107 51 STRAND 229 107 231 COLOUR_TEXT_REGION 229 107 231 107 51 STRAND 251 107 255 COLOUR_TEXT_REGION 251 107 255 107 51 STRAND 259 107 264 COLOUR_TEXT_REGION 259 107 264 107 51 STRAND 342 107 348 COLOUR_TEXT_REGION 342 107 348 107 51 STRAND 353 107 357 COLOUR_TEXT_REGION 353 107 357 107 51 HELIX 32 107 39 COLOUR_TEXT_REGION 32 107 39 107 50 HELIX 64 107 79 COLOUR_TEXT_REGION 64 107 79 107 50 HELIX 99 107 113 COLOUR_TEXT_REGION 99 107 113 107 50 HELIX 132 107 151 COLOUR_TEXT_REGION 132 107 151 107 50 HELIX 195 107 196 COLOUR_TEXT_REGION 195 107 196 107 50 HELIX 204 107 211 COLOUR_TEXT_REGION 204 107 211 107 50 HELIX 215 107 223 COLOUR_TEXT_REGION 215 107 223 107 50 HELIX 232 107 246 COLOUR_TEXT_REGION 232 107 246 107 50 HELIX 267 107 282 COLOUR_TEXT_REGION 267 107 282 107 50 HELIX 288 107 299 COLOUR_TEXT_REGION 288 107 299 107 50 HELIX 305 107 318 COLOUR_TEXT_REGION 305 107 318 107 50 HELIX 327 107 336 COLOUR_TEXT_REGION 327 107 336 107 50 HELIX 361 107 366 COLOUR_TEXT_REGION 361 107 366 107 50