SILENT_MODE
BLOCK_FILE jp_wrrH9_Y.concise.blc
MAX_NSEQ 944
MAX_INPUT_LEN 946
OUTPUT_FILE jp_wrrH9_Y.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 121 933   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 934 121 943 H SPACE
SUB_CHARS 1 934 121 943 E SPACE
SUB_CHARS 1 934 121 943 - SPACE
STRAND 34 937 38
COLOUR_TEXT_REGION 34 937 38 937 51
STRAND 42 937 46
COLOUR_TEXT_REGION 42 937 46 937 51
STRAND 50 937 55
COLOUR_TEXT_REGION 50 937 55 937 51
STRAND 60 937 65
COLOUR_TEXT_REGION 60 937 65 937 51
STRAND 86 937 90
COLOUR_TEXT_REGION 86 937 90 937 51
HELIX 3 937 8
COLOUR_TEXT_REGION 3 937 8 937 50
HELIX 13 937 30
COLOUR_TEXT_REGION 13 937 30 937 50
HELIX 70 937 79
COLOUR_TEXT_REGION 70 937 79 937 50
HELIX 98 937 114
COLOUR_TEXT_REGION 98 937 114 937 50
STRAND 34 942 39
COLOUR_TEXT_REGION 34 942 39 942 51
STRAND 42 942 46
COLOUR_TEXT_REGION 42 942 46 942 51
STRAND 50 942 54
COLOUR_TEXT_REGION 50 942 54 942 51
STRAND 60 942 65
COLOUR_TEXT_REGION 60 942 65 942 51
STRAND 87 942 89
COLOUR_TEXT_REGION 87 942 89 942 51
HELIX 3 942 8
COLOUR_TEXT_REGION 3 942 8 942 50
HELIX 13 942 30
COLOUR_TEXT_REGION 13 942 30 942 50
HELIX 70 942 78
COLOUR_TEXT_REGION 70 942 78 942 50
HELIX 98 942 114
COLOUR_TEXT_REGION 98 942 114 942 50
STRAND 34 943 37
COLOUR_TEXT_REGION 34 943 37 943 51
STRAND 44 943 46
COLOUR_TEXT_REGION 44 943 46 943 51
STRAND 50 943 56
COLOUR_TEXT_REGION 50 943 56 943 51
STRAND 60 943 65
COLOUR_TEXT_REGION 60 943 65 943 51
STRAND 85 943 90
COLOUR_TEXT_REGION 85 943 90 943 51
HELIX 3 943 8
COLOUR_TEXT_REGION 3 943 8 943 50
HELIX 13 943 30
COLOUR_TEXT_REGION 13 943 30 943 50
HELIX 72 943 79
COLOUR_TEXT_REGION 72 943 79 943 50
HELIX 98 943 113
COLOUR_TEXT_REGION 98 943 113 943 50