QUERY                  : MLFSIQTCPCQINPALNAVSTPLLYQDCCQPYHDGLYNQ : QUERY 
UniRef90_Q1Q839        : MSISLQTCPCQMNPSSDDISAPLLYQDCCQPYHDSLLSE : UniRef90_Q1Q839
UniRef90_U4TEX4        : -----QICPCQIHPSAGAISSPLLYKDCCQPYHDGLGNE : UniRef90_U4TEX4
UniRef90_UPI000287ED9E : --MSLQTCPCQVNPISQSLSSPLLYKDCCQPYHDSLLSE : UniRef90_UPI000287ED9E
UniRef90_UPI00040B0155 : MQPNLHVCPCQIHPSSSAISSPLLYKDCCQPYHEAVYND : UniRef90_UPI00040B0155
UniRef90_X0QED5        : ------TCPCQINPTTETTDAPLSYQDCCQPYHDAFYN- : UniRef90_X0QED5
UniRef90_UPI000400CE2F : -------CPCQVSPTPNSLSQPIAYSDCCQPYHKGL--- : UniRef90_UPI000400CE2F

                       : 1---------11--------21--------31------- :
OrigSeq                : MLFSIQTCPCQINPALNAVSTPLLYQDCCQPYHDGLYNQ : OrigSeq

Jnet                   : ---EEEE---EE----------HHH----HHHHHHH--- : Jnet
jhmm                   : ----E-----EE-----------H------HHHHHHH-- : jhmm
jpssm                  : --EEEEEE-EEE--------HHHHHHHHHHHHHHH---- : jpssm

Lupas 14               : --------------------------------------- : Lupas 14
Lupas 21               : --------------------------------------- : Lupas 21
Lupas 28               : --------------------------------------- : Lupas 28

Jnet_25                : ----B--BBB-B------B--BBBB--BB--BB--B--- : Jnet_25
Jnet_5                 : -------B-B-B----------B----BB---------- : Jnet_5
Jnet_0                 : --------------------------------------- : Jnet_0
Jnet Rel               : 982162222164367887641026202330455532399 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.