Filename Description -------- ----------- jp_zpw65JB.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_zpw65JB.als Alscript command file. Used to generate PS/PDF outputjp_zpw65JB.blast.gz PSIBLAST output (compressed) jp_zpw65JB.coils.csv The output from coils in CSV format jp_zpw65JB.coilseq.lupas_14 The output from coils using a window length of 14 jp_zpw65JB.coilseq.lupas_21 The output from coils using a window length of 21 jp_zpw65JB.coilseq.lupas_28 The output from coils using a window length of 28 jp_zpw65JB.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_zpw65JB.concise.blc A BLC file of the prediction and alignment jp_zpw65JB.concise.pdf A PDF file of the prediction and alignment jp_zpw65JB.fasta Input query sequence in FASTA format jp_zpw65JB.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_zpw65JB.hmm The HHMer2 profile of the alignment jp_zpw65JB.html A HTML file of the prediction and alignment jp_zpw65JB.input Your raw input jp_zpw65JB.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_zpw65JB.jnet The output from Jnet jp_zpw65JB.profile PSIBLAST profile jp_zpw65JB.pssm PSIBLAST PSSM in a format for Jnet jp_zpw65JB.seq Your sequence jp_zpw65JB.simple.html The brief HTML output of the query sequence and prediction only jp_zpw65JB.svg.html A Jalview generated SVG file with summary of the results.