SILENT_MODE BLOCK_FILE jp_zpw65JB.concise.blc MAX_NSEQ 360 MAX_INPUT_LEN 362 OUTPUT_FILE jp_zpw65JB.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 84 349 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 350 84 359 H SPACE SUB_CHARS 1 350 84 359 E SPACE SUB_CHARS 1 350 84 359 - SPACE STRAND 4 353 11 COLOUR_TEXT_REGION 4 353 11 353 51 STRAND 17 353 25 COLOUR_TEXT_REGION 17 353 25 353 51 STRAND 28 353 31 COLOUR_TEXT_REGION 28 353 31 353 51 STRAND 34 353 38 COLOUR_TEXT_REGION 34 353 38 353 51 STRAND 43 353 46 COLOUR_TEXT_REGION 43 353 46 353 51 STRAND 57 353 63 COLOUR_TEXT_REGION 57 353 63 353 51 HELIX 66 353 81 COLOUR_TEXT_REGION 66 353 81 353 50 STRAND 4 358 10 COLOUR_TEXT_REGION 4 358 10 358 51 STRAND 17 358 25 COLOUR_TEXT_REGION 17 358 25 358 51 STRAND 28 358 31 COLOUR_TEXT_REGION 28 358 31 358 51 STRAND 34 358 38 COLOUR_TEXT_REGION 34 358 38 358 51 STRAND 43 358 46 COLOUR_TEXT_REGION 43 358 46 358 51 STRAND 57 358 63 COLOUR_TEXT_REGION 57 358 63 358 51 HELIX 66 358 82 COLOUR_TEXT_REGION 66 358 82 358 50 STRAND 3 359 11 COLOUR_TEXT_REGION 3 359 11 359 51 STRAND 17 359 25 COLOUR_TEXT_REGION 17 359 25 359 51 STRAND 28 359 38 COLOUR_TEXT_REGION 28 359 38 359 51 STRAND 43 359 46 COLOUR_TEXT_REGION 43 359 46 359 51 STRAND 57 359 63 COLOUR_TEXT_REGION 57 359 63 359 51 HELIX 66 359 81 COLOUR_TEXT_REGION 66 359 81 359 50