SILENT_MODE
BLOCK_FILE jp_GsGXbbF.concise.blc
MAX_NSEQ 231
MAX_INPUT_LEN 233
OUTPUT_FILE jp_GsGXbbF.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 165 220   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 221 165 230 H SPACE
SUB_CHARS 1 221 165 230 E SPACE
SUB_CHARS 1 221 165 230 - SPACE
STRAND 26 224 34
COLOUR_TEXT_REGION 26 224 34 224 51
STRAND 39 224 46
COLOUR_TEXT_REGION 39 224 46 224 51
STRAND 53 224 55
COLOUR_TEXT_REGION 53 224 55 224 51
STRAND 96 224 104
COLOUR_TEXT_REGION 96 224 104 224 51
STRAND 109 224 113
COLOUR_TEXT_REGION 109 224 113 224 51
HELIX 3 224 18
COLOUR_TEXT_REGION 3 224 18 224 50
HELIX 67 224 90
COLOUR_TEXT_REGION 67 224 90 224 50
HELIX 123 224 133
COLOUR_TEXT_REGION 123 224 133 224 50
HELIX 141 224 155
COLOUR_TEXT_REGION 141 224 155 224 50
STRAND 26 229 34
COLOUR_TEXT_REGION 26 229 34 229 51
STRAND 38 229 46
COLOUR_TEXT_REGION 38 229 46 229 51
STRAND 53 229 55
COLOUR_TEXT_REGION 53 229 55 229 51
STRAND 97 229 104
COLOUR_TEXT_REGION 97 229 104 229 51
STRAND 109 229 113
COLOUR_TEXT_REGION 109 229 113 229 51
HELIX 3 229 17
COLOUR_TEXT_REGION 3 229 17 229 50
HELIX 67 229 90
COLOUR_TEXT_REGION 67 229 90 229 50
HELIX 124 229 133
COLOUR_TEXT_REGION 124 229 133 229 50
HELIX 141 229 155
COLOUR_TEXT_REGION 141 229 155 229 50
STRAND 26 230 33
COLOUR_TEXT_REGION 26 230 33 230 51
STRAND 39 230 45
COLOUR_TEXT_REGION 39 230 45 230 51
STRAND 53 230 56
COLOUR_TEXT_REGION 53 230 56 230 51
STRAND 95 230 104
COLOUR_TEXT_REGION 95 230 104 230 51
STRAND 108 230 114
COLOUR_TEXT_REGION 108 230 114 230 51
HELIX 2 230 19
COLOUR_TEXT_REGION 2 230 19 230 50
HELIX 67 230 89
COLOUR_TEXT_REGION 67 230 89 230 50
HELIX 123 230 133
COLOUR_TEXT_REGION 123 230 133 230 50
HELIX 140 230 152
COLOUR_TEXT_REGION 140 230 152 230 50