SILENT_MODE
BLOCK_FILE jp_T6nzDCU.concise.blc
MAX_NSEQ 1312
MAX_INPUT_LEN 1314
OUTPUT_FILE jp_T6nzDCU.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 111 1301   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1302 111 1311 H SPACE
SUB_CHARS 1 1302 111 1311 E SPACE
SUB_CHARS 1 1302 111 1311 - SPACE
STRAND 4 1305 4
COLOUR_TEXT_REGION 4 1305 4 1305 51
STRAND 26 1305 28
COLOUR_TEXT_REGION 26 1305 28 1305 51
STRAND 67 1305 76
COLOUR_TEXT_REGION 67 1305 76 1305 51
STRAND 83 1305 94
COLOUR_TEXT_REGION 83 1305 94 1305 51
STRAND 99 1305 107
COLOUR_TEXT_REGION 99 1305 107 1305 51
HELIX 5 1305 19
COLOUR_TEXT_REGION 5 1305 19 1305 50
HELIX 36 1305 39
COLOUR_TEXT_REGION 36 1305 39 1305 50
HELIX 46 1305 63
COLOUR_TEXT_REGION 46 1305 63 1305 50
STRAND 67 1310 76
COLOUR_TEXT_REGION 67 1310 76 1310 51
STRAND 83 1310 94
COLOUR_TEXT_REGION 83 1310 94 1310 51
STRAND 98 1310 107
COLOUR_TEXT_REGION 98 1310 107 1310 51
HELIX 4 1310 19
COLOUR_TEXT_REGION 4 1310 19 1310 50
HELIX 37 1310 39
COLOUR_TEXT_REGION 37 1310 39 1310 50
HELIX 46 1310 63
COLOUR_TEXT_REGION 46 1310 63 1310 50
STRAND 3 1311 5
COLOUR_TEXT_REGION 3 1311 5 1311 51
STRAND 26 1311 29
COLOUR_TEXT_REGION 26 1311 29 1311 51
STRAND 67 1311 76
COLOUR_TEXT_REGION 67 1311 76 1311 51
STRAND 83 1311 94
COLOUR_TEXT_REGION 83 1311 94 1311 51
STRAND 99 1311 107
COLOUR_TEXT_REGION 99 1311 107 1311 51
HELIX 6 1311 19
COLOUR_TEXT_REGION 6 1311 19 1311 50
HELIX 36 1311 40
COLOUR_TEXT_REGION 36 1311 40 1311 50
HELIX 46 1311 62
COLOUR_TEXT_REGION 46 1311 62 1311 50