SILENT_MODE BLOCK_FILE jp__j2ZLpn.concise.blc MAX_NSEQ 1003 MAX_INPUT_LEN 1005 OUTPUT_FILE jp__j2ZLpn.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 140 992 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 993 140 1002 H SPACE SUB_CHARS 1 993 140 1002 E SPACE SUB_CHARS 1 993 140 1002 - SPACE STRAND 28 996 35 COLOUR_TEXT_REGION 28 996 35 996 51 STRAND 91 996 95 COLOUR_TEXT_REGION 91 996 95 996 51 STRAND 106 996 113 COLOUR_TEXT_REGION 106 996 113 996 51 STRAND 118 996 127 COLOUR_TEXT_REGION 118 996 127 996 51 STRAND 131 996 135 COLOUR_TEXT_REGION 131 996 135 996 51 HELIX 5 996 21 COLOUR_TEXT_REGION 5 996 21 996 50 HELIX 39 996 40 COLOUR_TEXT_REGION 39 996 40 996 50 HELIX 48 996 55 COLOUR_TEXT_REGION 48 996 55 996 50 HELIX 65 996 72 COLOUR_TEXT_REGION 65 996 72 996 50 STRAND 29 1001 35 COLOUR_TEXT_REGION 29 1001 35 1001 51 STRAND 92 1001 95 COLOUR_TEXT_REGION 92 1001 95 1001 51 STRAND 106 1001 113 COLOUR_TEXT_REGION 106 1001 113 1001 51 STRAND 118 1001 127 COLOUR_TEXT_REGION 118 1001 127 1001 51 STRAND 131 1001 135 COLOUR_TEXT_REGION 131 1001 135 1001 51 HELIX 5 1001 21 COLOUR_TEXT_REGION 5 1001 21 1001 50 HELIX 48 1001 55 COLOUR_TEXT_REGION 48 1001 55 1001 50 HELIX 66 1001 72 COLOUR_TEXT_REGION 66 1001 72 1001 50 STRAND 28 1002 35 COLOUR_TEXT_REGION 28 1002 35 1002 51 STRAND 84 1002 86 COLOUR_TEXT_REGION 84 1002 86 1002 51 STRAND 91 1002 95 COLOUR_TEXT_REGION 91 1002 95 1002 51 STRAND 106 1002 113 COLOUR_TEXT_REGION 106 1002 113 1002 51 STRAND 118 1002 126 COLOUR_TEXT_REGION 118 1002 126 1002 51 STRAND 131 1002 135 COLOUR_TEXT_REGION 131 1002 135 1002 51 HELIX 5 1002 20 COLOUR_TEXT_REGION 5 1002 20 1002 50 HELIX 38 1002 42 COLOUR_TEXT_REGION 38 1002 42 1002 50 HELIX 47 1002 54 COLOUR_TEXT_REGION 47 1002 54 1002 50 HELIX 65 1002 72 COLOUR_TEXT_REGION 65 1002 72 1002 50