SILENT_MODE
BLOCK_FILE jp_UrTLfue.concise.blc
MAX_NSEQ 114
MAX_INPUT_LEN 116
OUTPUT_FILE jp_UrTLfue.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 113 103   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 104 113 113 H SPACE
SUB_CHARS 1 104 113 113 E SPACE
SUB_CHARS 1 104 113 113 - SPACE
STRAND 6 107 9
COLOUR_TEXT_REGION 6 107 9 107 51
STRAND 15 107 18
COLOUR_TEXT_REGION 15 107 18 107 51
STRAND 24 107 27
COLOUR_TEXT_REGION 24 107 27 107 51
STRAND 33 107 34
COLOUR_TEXT_REGION 33 107 34 107 51
STRAND 40 107 44
COLOUR_TEXT_REGION 40 107 44 107 51
STRAND 56 107 62
COLOUR_TEXT_REGION 56 107 62 107 51
STRAND 68 107 74
COLOUR_TEXT_REGION 68 107 74 107 51
STRAND 81 107 83
COLOUR_TEXT_REGION 81 107 83 107 51
STRAND 110 107 111
COLOUR_TEXT_REGION 110 107 111 107 51
HELIX 90 107 106
COLOUR_TEXT_REGION 90 107 106 107 50
STRAND 6 112 9
COLOUR_TEXT_REGION 6 112 9 112 51
STRAND 15 112 18
COLOUR_TEXT_REGION 15 112 18 112 51
STRAND 25 112 27
COLOUR_TEXT_REGION 25 112 27 112 51
STRAND 33 112 34
COLOUR_TEXT_REGION 33 112 34 112 51
STRAND 40 112 44
COLOUR_TEXT_REGION 40 112 44 112 51
STRAND 57 112 63
COLOUR_TEXT_REGION 57 112 63 112 51
STRAND 68 112 74
COLOUR_TEXT_REGION 68 112 74 112 51
STRAND 110 112 112
COLOUR_TEXT_REGION 110 112 112 112 51
HELIX 24 112 24
COLOUR_TEXT_REGION 24 112 24 112 50
HELIX 90 112 106
COLOUR_TEXT_REGION 90 112 106 112 50
STRAND 6 113 8
COLOUR_TEXT_REGION 6 113 8 113 51
STRAND 14 113 19
COLOUR_TEXT_REGION 14 113 19 113 51
STRAND 24 113 26
COLOUR_TEXT_REGION 24 113 26 113 51
STRAND 32 113 34
COLOUR_TEXT_REGION 32 113 34 113 51
STRAND 39 113 45
COLOUR_TEXT_REGION 39 113 45 113 51
STRAND 56 113 62
COLOUR_TEXT_REGION 56 113 62 113 51
STRAND 68 113 74
COLOUR_TEXT_REGION 68 113 74 113 51
STRAND 80 113 83
COLOUR_TEXT_REGION 80 113 83 113 51
STRAND 111 113 111
COLOUR_TEXT_REGION 111 113 111 113 51
HELIX 90 113 106
COLOUR_TEXT_REGION 90 113 106 113 50