SILENT_MODE BLOCK_FILE jp_byPUizW.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_byPUizW.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 213 5 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 6 213 15 H SPACE SUB_CHARS 1 6 213 15 E SPACE SUB_CHARS 1 6 213 15 - SPACE STRAND 22 9 25 COLOUR_TEXT_REGION 22 9 25 9 51 STRAND 199 9 200 COLOUR_TEXT_REGION 199 9 200 9 51 HELIX 14 9 18 COLOUR_TEXT_REGION 14 9 18 9 50 HELIX 26 9 34 COLOUR_TEXT_REGION 26 9 34 9 50 HELIX 40 9 66 COLOUR_TEXT_REGION 40 9 66 9 50 HELIX 69 9 89 COLOUR_TEXT_REGION 69 9 89 9 50 HELIX 97 9 113 COLOUR_TEXT_REGION 97 9 113 9 50 HELIX 120 9 122 COLOUR_TEXT_REGION 120 9 122 9 50 HELIX 128 9 138 COLOUR_TEXT_REGION 128 9 138 9 50 HELIX 140 9 146 COLOUR_TEXT_REGION 140 9 146 9 50 HELIX 160 9 167 COLOUR_TEXT_REGION 160 9 167 9 50 HELIX 174 9 193 COLOUR_TEXT_REGION 174 9 193 9 50 HELIX 206 9 210 COLOUR_TEXT_REGION 206 9 210 9 50 STRAND 22 14 25 COLOUR_TEXT_REGION 22 14 25 14 51 STRAND 86 14 86 COLOUR_TEXT_REGION 86 14 86 14 51 STRAND 120 14 122 COLOUR_TEXT_REGION 120 14 122 14 51 STRAND 160 14 167 COLOUR_TEXT_REGION 160 14 167 14 51 STRAND 199 14 200 COLOUR_TEXT_REGION 199 14 200 14 51 HELIX 14 14 18 COLOUR_TEXT_REGION 14 14 18 14 50 HELIX 26 14 34 COLOUR_TEXT_REGION 26 14 34 14 50 HELIX 39 14 39 COLOUR_TEXT_REGION 39 14 39 14 50 HELIX 41 14 64 COLOUR_TEXT_REGION 41 14 64 14 50 HELIX 69 14 85 COLOUR_TEXT_REGION 69 14 85 14 50 HELIX 87 14 90 COLOUR_TEXT_REGION 87 14 90 14 50 HELIX 97 14 113 COLOUR_TEXT_REGION 97 14 113 14 50 HELIX 128 14 146 COLOUR_TEXT_REGION 128 14 146 14 50 HELIX 174 14 193 COLOUR_TEXT_REGION 174 14 193 14 50 HELIX 207 14 210 COLOUR_TEXT_REGION 207 14 210 14 50 STRAND 3 15 4 COLOUR_TEXT_REGION 3 15 4 15 51 STRAND 23 15 24 COLOUR_TEXT_REGION 23 15 24 15 51 STRAND 144 15 146 COLOUR_TEXT_REGION 144 15 146 15 51 STRAND 199 15 200 COLOUR_TEXT_REGION 199 15 200 15 51 HELIX 14 15 18 COLOUR_TEXT_REGION 14 15 18 15 50 HELIX 21 15 22 COLOUR_TEXT_REGION 21 15 22 15 50 HELIX 25 15 25 COLOUR_TEXT_REGION 25 15 25 15 50 HELIX 29 15 34 COLOUR_TEXT_REGION 29 15 34 15 50 HELIX 40 15 89 COLOUR_TEXT_REGION 40 15 89 15 50 HELIX 97 15 112 COLOUR_TEXT_REGION 97 15 112 15 50 HELIX 119 15 123 COLOUR_TEXT_REGION 119 15 123 15 50 HELIX 128 15 138 COLOUR_TEXT_REGION 128 15 138 15 50 HELIX 140 15 143 COLOUR_TEXT_REGION 140 15 143 15 50 HELIX 158 15 167 COLOUR_TEXT_REGION 158 15 167 15 50 HELIX 174 15 193 COLOUR_TEXT_REGION 174 15 193 15 50 HELIX 206 15 210 COLOUR_TEXT_REGION 206 15 210 15 50