SILENT_MODE
BLOCK_FILE jp_nIZaw9m.concise.blc
MAX_NSEQ 813
MAX_INPUT_LEN 815
OUTPUT_FILE jp_nIZaw9m.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 112 802   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 803 112 812 H SPACE
SUB_CHARS 1 803 112 812 E SPACE
SUB_CHARS 1 803 112 812 - SPACE
STRAND 3 806 8
COLOUR_TEXT_REGION 3 806 8 806 51
STRAND 13 806 21
COLOUR_TEXT_REGION 13 806 21 806 51
STRAND 32 806 32
COLOUR_TEXT_REGION 32 806 32 806 51
STRAND 57 806 61
COLOUR_TEXT_REGION 57 806 61 806 51
STRAND 67 806 72
COLOUR_TEXT_REGION 67 806 72 806 51
STRAND 106 806 110
COLOUR_TEXT_REGION 106 806 110 806 51
HELIX 33 806 51
COLOUR_TEXT_REGION 33 806 51 806 50
HELIX 81 806 101
COLOUR_TEXT_REGION 81 806 101 806 50
STRAND 3 811 8
COLOUR_TEXT_REGION 3 811 8 811 51
STRAND 14 811 21
COLOUR_TEXT_REGION 14 811 21 811 51
STRAND 32 811 33
COLOUR_TEXT_REGION 32 811 33 811 51
STRAND 57 811 61
COLOUR_TEXT_REGION 57 811 61 811 51
STRAND 67 811 72
COLOUR_TEXT_REGION 67 811 72 811 51
STRAND 106 811 110
COLOUR_TEXT_REGION 106 811 110 811 51
HELIX 34 811 34
COLOUR_TEXT_REGION 34 811 34 811 50
HELIX 36 811 51
COLOUR_TEXT_REGION 36 811 51 811 50
HELIX 82 811 101
COLOUR_TEXT_REGION 82 811 101 811 50
STRAND 3 812 8
COLOUR_TEXT_REGION 3 812 8 812 51
STRAND 13 812 21
COLOUR_TEXT_REGION 13 812 21 812 51
STRAND 57 812 62
COLOUR_TEXT_REGION 57 812 62 812 51
STRAND 67 812 73
COLOUR_TEXT_REGION 67 812 73 812 51
STRAND 106 812 110
COLOUR_TEXT_REGION 106 812 110 812 51
HELIX 32 812 51
COLOUR_TEXT_REGION 32 812 51 812 50
HELIX 81 812 101
COLOUR_TEXT_REGION 81 812 101 812 50