SILENT_MODE
BLOCK_FILE jp_NcAdg3l.concise.blc
MAX_NSEQ 100
MAX_INPUT_LEN 102
OUTPUT_FILE jp_NcAdg3l.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 117 89   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 90 117 99 H SPACE
SUB_CHARS 1 90 117 99 E SPACE
SUB_CHARS 1 90 117 99 - SPACE
STRAND 38 93 42
COLOUR_TEXT_REGION 38 93 42 93 51
STRAND 48 93 50
COLOUR_TEXT_REGION 48 93 50 93 51
STRAND 86 93 91
COLOUR_TEXT_REGION 86 93 91 93 51
STRAND 94 93 98
COLOUR_TEXT_REGION 94 93 98 93 51
STRAND 106 93 112
COLOUR_TEXT_REGION 106 93 112 93 51
HELIX 27 93 33
COLOUR_TEXT_REGION 27 93 33 93 50
HELIX 53 93 76
COLOUR_TEXT_REGION 53 93 76 93 50
STRAND 37 98 42
COLOUR_TEXT_REGION 37 98 42 98 51
STRAND 48 98 49
COLOUR_TEXT_REGION 48 98 49 98 51
STRAND 86 98 90
COLOUR_TEXT_REGION 86 98 90 98 51
STRAND 94 98 97
COLOUR_TEXT_REGION 94 98 97 98 51
STRAND 105 98 112
COLOUR_TEXT_REGION 105 98 112 98 51
HELIX 30 98 33
COLOUR_TEXT_REGION 30 98 33 98 50
HELIX 53 98 76
COLOUR_TEXT_REGION 53 98 76 98 50
STRAND 38 99 41
COLOUR_TEXT_REGION 38 99 41 99 51
STRAND 47 99 51
COLOUR_TEXT_REGION 47 99 51 99 51
STRAND 86 99 91
COLOUR_TEXT_REGION 86 99 91 99 51
STRAND 94 99 98
COLOUR_TEXT_REGION 94 99 98 99 51
STRAND 106 99 112
COLOUR_TEXT_REGION 106 99 112 99 51
HELIX 26 99 33
COLOUR_TEXT_REGION 26 99 33 99 50
HELIX 59 99 75
COLOUR_TEXT_REGION 59 99 75 99 50