SILENT_MODE BLOCK_FILE jp_UACLnTs.concise.blc MAX_NSEQ 1219 MAX_INPUT_LEN 1221 OUTPUT_FILE jp_UACLnTs.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 88 1208 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1209 88 1218 H SPACE SUB_CHARS 1 1209 88 1218 E SPACE SUB_CHARS 1 1209 88 1218 - SPACE STRAND 3 1212 9 COLOUR_TEXT_REGION 3 1212 9 1212 51 STRAND 30 1212 31 COLOUR_TEXT_REGION 30 1212 31 1212 51 STRAND 33 1212 39 COLOUR_TEXT_REGION 33 1212 39 1212 51 STRAND 68 1212 73 COLOUR_TEXT_REGION 68 1212 73 1212 51 STRAND 80 1212 85 COLOUR_TEXT_REGION 80 1212 85 1212 51 HELIX 15 1212 25 COLOUR_TEXT_REGION 15 1212 25 1212 50 HELIX 42 1212 58 COLOUR_TEXT_REGION 42 1212 58 1212 50 STRAND 3 1217 9 COLOUR_TEXT_REGION 3 1217 9 1217 51 STRAND 33 1217 39 COLOUR_TEXT_REGION 33 1217 39 1217 51 STRAND 68 1217 73 COLOUR_TEXT_REGION 68 1217 73 1217 51 STRAND 79 1217 85 COLOUR_TEXT_REGION 79 1217 85 1217 51 HELIX 15 1217 25 COLOUR_TEXT_REGION 15 1217 25 1217 50 HELIX 42 1217 58 COLOUR_TEXT_REGION 42 1217 58 1217 50 STRAND 3 1218 9 COLOUR_TEXT_REGION 3 1218 9 1218 51 STRAND 30 1218 32 COLOUR_TEXT_REGION 30 1218 32 1218 51 STRAND 34 1218 39 COLOUR_TEXT_REGION 34 1218 39 1218 51 STRAND 68 1218 74 COLOUR_TEXT_REGION 68 1218 74 1218 51 STRAND 80 1218 85 COLOUR_TEXT_REGION 80 1218 85 1218 51 HELIX 14 1218 25 COLOUR_TEXT_REGION 14 1218 25 1218 50 HELIX 42 1218 58 COLOUR_TEXT_REGION 42 1218 58 1218 50