QUERY : IFISNDKESIKCPCEPERISESTCNFYVCNCVEK : QUERY
UniRef90_Q4YZP5 : IFISTDKNSLNCPCEPTQLTESSCNFYVCNCVEK : UniRef90_Q4YZP5
UniRef90_P16445 : IFISDDKESLNCPCEPTQLTQSTCKFFVCNCVEK : UniRef90_P16445
UniRef90_Q7RP78 : IFISTDKNSLNCPCDPTKLTESTCEFYVCSCVEQ : UniRef90_Q7RP78
UniRef90_B2KKZ6 : IFISDDKDSLKCPCAPEMVSKSTCRFFVCKCVER : UniRef90_B2KKZ6
: 1---------11--------21--------31-- :
OrigSeq : IFISNDKESIKCPCEPERISESTCNFYVCNCVEK : OrigSeq
Jnet : --E---------------------EEEEEE---- : Jnet
jhmm : --EE--------------------EEEEEE---- : jhmm
jpssm : -------------------------EEEEE---- : jpssm
Lupas 14 : ---------------------------------- : Lupas 14
Lupas 21 : ---------------------------------- : Lupas 21
Lupas 28 : ---------------------------------- : Lupas 28
Jnet_25 : -BB------B-B-B-B--B---BB-BBBB-BB-- : Jnet_25
Jnet_5 : -----------------------B---BB-B--- : Jnet_5
Jnet_0 : ---------------------------------- : Jnet_0
Jnet Rel : 7301677633577775322356771564431799 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.