QUERY : LVPRGSHMTIDQWLLKNAKEDAIAELKKAGITSDFYFNAINKAKTVEEVNALKNEILKAHA : QUERY
UniRef90_E1KY41 : -------ITIDEWLLKNAKEDAIKELKEAGIKSQFFFNLINNAKTVEGVESLKNEILKAHA : UniRef90_E1KY41
UniRef90_E1KY41 : -------------------------IRKEGVKSKLYEDLINKAKTIDGVNALRDQIIEAH- : UniRef90_E1KY41
UniRef90_E1NUT2 : ----AAHKTPAVDALAEAKKAAHEEFTKAGITGKIFHDAIDAAKTVEGLQAYVAETLKAH- : UniRef90_E1NUT2
UniRef90_E1NUT2 : ---------PAADVLAEAKNVAHAEFTKAGITGKIFHDAIDAAKTVEGLQAYVAETLAAH- : UniRef90_E1NUT2
UniRef90_Q51918 : -------ITIDEWLLKNAKEDAIKELKEAGISSDIYFDAINKAKTVEGVEALKNEILKAHA : UniRef90_Q51918
UniRef90_Q51918 : -------ITIDEWLLKNAKEEAIKELKEAGITSDLYFSLINKAKTVEGVEALKNEILKAHA : UniRef90_Q51918
UniRef90_Q51918 : -------ITIDEWLLKNAKEDAIKELKEAGITSDIYFDAINKAKTIEGVEALKNEILKAH- : UniRef90_Q51918
UniRef90_Q51918 : -------ITIDEWLLKNAKEAAIKELKEAGITAEYLFNLINKAKTVEGVESLKNEILKAHA : UniRef90_Q51918
UniRef90_F3LZY8 : ---------LAKAELFYAKEDAHKALNDAGITGDIFHKAIDAAKTVAGVNAYVAETLAAH- : UniRef90_F3LZY8
UniRef90_K9EAV4 : ----------AEAELQAAKESAIAEVKAAGFTDQKYVDWINAQETVQDVNGVKREIL---- : UniRef90_K9EAV4
UniRef90_K9EAV4 : -----------QAALETEKEFAIAEVQAAGFTDQKYVDWINAQETVQDVNGVKREIL---- : UniRef90_K9EAV4
UniRef90_B4U242 : ---------LAAEALLKAKEAAINELKQYGI-SDYYVTLINKAKTVEGVNALKAEILSA-- : UniRef90_B4U242
UniRef90_K9EPZ2 : ----------EAEALETAKAEAIEELTADGVTSDLWFELINKANTIEGVGSLKNDILNAR- : UniRef90_K9EPZ2
UniRef90_K8MWT0 : ----GEVKTVKDYALEDAKSLAKSALKSEG-ASDFYINKIDSANTVEGVNSLKDSIIES-- : UniRef90_K8MWT0
UniRef90_B0S4H6 : -------KLFKQEELKKAKEQAIAELKANGITSKFFVDRINAGKTVEGVKALKEELIKSH- : UniRef90_B0S4H6
UniRef90_B0S4H6 : ----------DSKALEEAKKQAIADLKANGITSKLFLDKIESAKTVEGVKSLKAELIKAH- : UniRef90_B0S4H6
UniRef90_P06654 : --------TVKSIELAEAKVLANRELDKYGV-SDYHKNLINNAKTVEGVKELIDEILAA-- : UniRef90_P06654
UniRef90_P06654 : -----------------------KEFNKYGV-SDYYKNLINNAKTVEGIKDLQAQVVES-- : UniRef90_P06654
UniRef90_Q51932 : --------------LQEAKDKAIQEAKANGVTSKLLLKNIENAKTPESAKSFAEELIKSH- : UniRef90_Q51932
UniRef90_E1KY24 : ----------------------------NGITSPVYIDKINKAKTVEGVNALKEEIIKAH- : UniRef90_E1KY24
UniRef90_I7WD78 : --------TLKSIKLSEAKEMAIRELDAQGV-SDFYKNKINNAKTVEGVVALKDLILNSLA : UniRef90_I7WD78
UniRef90_I7WD78 : ----------KAAALDQAKQAALKEFDRYGV-SNYYKNLINKAKTVEGIMELQAQVVES-- : UniRef90_I7WD78
UniRef90_T1Z9A6 : ---KSEKKLADAWELEAAKDAALKELNQYGV-SDYYKKLVNSAKTVAGVKKLQAQVVES-- : UniRef90_T1Z9A6
UniRef90_T1Z9A6 : --------TIKSLELSEAKTLALREFDKYGV-SDYYKKLVNSAKTVEGVAALKDLILNS-- : UniRef90_T1Z9A6
UniRef90_E3BXE5 : -------------ALEAAKKSAHETLKKAGITGDIFHKAIDAAKTLEGLKAYVAETLA--- : UniRef90_E3BXE5
UniRef90_E3BXE5 : ----------------------HEEFTKAGITGKIFHDAIDAAKTLEGLKAYVAETLAAH- : UniRef90_E3BXE5
UniRef90_F9MY06 : -----------AAKLQGAKDEAKEKLKANGIASEFYLKQVDAAKNVESLNSFVKMLIDEH- : UniRef90_F9MY06
UniRef90_G3YY75 : -------------------------LNDAGITGAIFHKAIDNATTVEGIKAYVAETLAAH- : UniRef90_G3YY75
UniRef90_UPI0004751B23 : -----------------------------GITSDLYFNLINKAKTVEGVESLKNEILKAH- : UniRef90_UPI0004751B23
UniRef90_UPI00038011B8 : --------------LEKAKEAALKELDEAG-ASDFFKNLISKANTVEGVESLKADVLAA-- : UniRef90_UPI00038011B8
UniRef90_H3NG65 : ----------KAEWLAAYKERTIEELKAKGFTNKFVFNIIQRANTIEGIDSVVAEL----- : UniRef90_H3NG65
UniRef90_K9E8M0 : ----------EEADLEAAKESAKAELQAAGATSPKLAEYIDFADTVEEVERLKNDFL---- : UniRef90_K9E8M0
UniRef90_K9E8M0 : ----------EAQALQAAKESAKAELQAAGATSPKLAEYIDSADSVEEVDRLKNDFLE--- : UniRef90_K9E8M0
UniRef90_Q53974 : --------------------DAIEILKKYGI-GDYYIKLINNGKTAEGVTALKDEILAS-- : UniRef90_Q53974
UniRef90_UPI00017EE951 : --------------LKQAKEEAIKELVDAGIA-EKYIKLIANAKTVEGVWTLKDEIL---- : UniRef90_UPI00017EE951
UniRef90_K9E8I0 : -----------QEALQTEKESAKAELQEAGATSPRLAQAIDAADSVEEVEQLKNDFL---- : UniRef90_K9E8I0
: 1---------11--------21--------31--------41--------51-------- :
OrigSeq : LVPRGSHMTIDQWLLKNAKEDAIAELKKAGITSDFYFNAINKAKTVEEVNALKNEILKAHA : OrigSeq
Jnet : -------HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH---HHHHHHHHHHHHHH-- : Jnet
jhmm : -------HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH---HHHHHHHHHHHHHH-- : jhmm
jpssm : ---------HHHHHHHHHHHHHHHHHHH-----HHHHHHHH----HHHHHHHHHHHHHH-- : jpssm
Lupas 14 : ------------------------------------------------------------- : Lupas 14
Lupas 21 : ------------------------------------------------------------- : Lupas 21
Lupas 28 : ------------------------------------------------------------- : Lupas 28
Jnet_25 : ------B-BB----B--BB--BB--B----B---BBB--B--B-BB--B--BB--BB---- : Jnet_25
Jnet_5 : --------------B------B---B---------B---B--------B--B--------- : Jnet_5
Jnet_0 : ------------------------------------------------------------- : Jnet_0
Jnet Rel : 9998875022789999999999999874388846899987408866899999999987289 : Jnet Rel
Notes
Key:
Colour code for alignment:
Blue - Complete identity at a position
Shades of red - The more red a position is, the higher the level of
conservation of chemical properties of the amino acids
Jnet - Final secondary structure prediction for query
jalign - Jnet alignment prediction
jhmm - Jnet hmm profile prediction
jpssm - Jnet PSIBLAST pssm profile prediction
Lupas - Lupas Coil prediction (window size of 14, 21 and 28)
Note on coiled coil predictions - = less than 50% probability
c = between 50% and 90% probability
C = greater than 90% probability
Jnet_25 - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5 - Jnet prediction of burial, less than 5% exposure
Jnet_0 - Jnet prediction of burial, 0% exposure
Jnet Rel - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.