SILENT_MODE BLOCK_FILE jp_0sRNi8s.concise.blc MAX_NSEQ 672 MAX_INPUT_LEN 674 OUTPUT_FILE jp_0sRNi8s.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 103 661 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 662 103 671 H SPACE SUB_CHARS 1 662 103 671 E SPACE SUB_CHARS 1 662 103 671 - SPACE STRAND 5 665 11 COLOUR_TEXT_REGION 5 665 11 665 51 STRAND 21 665 25 COLOUR_TEXT_REGION 21 665 25 665 51 STRAND 46 665 53 COLOUR_TEXT_REGION 46 665 53 665 51 STRAND 59 665 66 COLOUR_TEXT_REGION 59 665 66 665 51 STRAND 78 665 81 COLOUR_TEXT_REGION 78 665 81 665 51 STRAND 87 665 93 COLOUR_TEXT_REGION 87 665 93 665 51 STRAND 97 665 98 COLOUR_TEXT_REGION 97 665 98 665 51 STRAND 5 670 11 COLOUR_TEXT_REGION 5 670 11 670 51 STRAND 21 670 25 COLOUR_TEXT_REGION 21 670 25 670 51 STRAND 46 670 53 COLOUR_TEXT_REGION 46 670 53 670 51 STRAND 59 670 66 COLOUR_TEXT_REGION 59 670 66 670 51 STRAND 78 670 81 COLOUR_TEXT_REGION 78 670 81 670 51 STRAND 87 670 93 COLOUR_TEXT_REGION 87 670 93 670 51 STRAND 97 670 98 COLOUR_TEXT_REGION 97 670 98 670 51 STRAND 5 671 12 COLOUR_TEXT_REGION 5 671 12 671 51 STRAND 22 671 26 COLOUR_TEXT_REGION 22 671 26 671 51 STRAND 46 671 52 COLOUR_TEXT_REGION 46 671 52 671 51 STRAND 59 671 66 COLOUR_TEXT_REGION 59 671 66 671 51 STRAND 78 671 81 COLOUR_TEXT_REGION 78 671 81 671 51 STRAND 87 671 93 COLOUR_TEXT_REGION 87 671 93 671 51 STRAND 98 671 98 COLOUR_TEXT_REGION 98 671 98 671 51