SILENT_MODE
BLOCK_FILE jp_iRQHIVi.concise.blc
MAX_NSEQ 500
MAX_INPUT_LEN 502
OUTPUT_FILE jp_iRQHIVi.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 175 489   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 490 175 499 H SPACE
SUB_CHARS 1 490 175 499 E SPACE
SUB_CHARS 1 490 175 499 - SPACE
STRAND 61 493 61
COLOUR_TEXT_REGION 61 493 61 493 51
STRAND 121 493 121
COLOUR_TEXT_REGION 121 493 121 493 51
STRAND 131 493 131
COLOUR_TEXT_REGION 131 493 131 493 51
HELIX 3 493 11
COLOUR_TEXT_REGION 3 493 11 493 50
HELIX 3 498 11
COLOUR_TEXT_REGION 3 498 11 498 50
STRAND 60 499 62
COLOUR_TEXT_REGION 60 499 62 499 51
STRAND 130 499 131
COLOUR_TEXT_REGION 130 499 131 499 51
HELIX 3 499 11
COLOUR_TEXT_REGION 3 499 11 499 50
HELIX 118 499 123
COLOUR_TEXT_REGION 118 499 123 499 50