QUERY           : KMKVKATKGEGDGGITSEGNALYNNAFMYAYVTTKPGMKYVKWEHDSGVVTVELEPPCRFVIDTPTGPQIKYLYFVKNLNNLRRGAVLGYIGATVRLQ : QUERY 
UniRef90_P0C6X5 : KLKQKPMKAEGDGGVLGDGNALYNKTFMYAYISNKADLKFVKWEYEGGCNTIELDSPCRFMVETPNGPQVKYLYFVKNLNTLRRGAVLGFIGATIRLQ : UniRef90_P0C6X5
UniRef90_S5YAF0 : KLKQRSVKAEGDG-VMAEGKALYNTTFMYAFLADKPDLKVVKWESDDGVKVIELEPPCKFLVDTPNGPHVKFLYFVRNLNTLRRGAVLGFVGATVRLQ : UniRef90_S5YAF0
UniRef90_K4JZB7 : KLKQRPVKAEGDG-ISADGMALFNNTFMYAFIADKPDLKFVKWEFDNGCSVIELEPPCRFAVQTPTGTTIKYLYFVRNLNTLRRGAVLGFIGATVRLQ : UniRef90_K4JZB7
UniRef90_A8JNZ0 : KLKQRAVKAEGDG-FSTDAKALYNTCFVYALIADKPDLKVVKWEYDGGCKTIELEPPLKFAVEAPTGVQIKYLYYVKNLNNLRRGATLGYIGATVRLQ : UniRef90_A8JNZ0
UniRef90_P0C6X6 : KLKIQVVNSGPDQTCNTPTQCYYNNSIVYAILSDVDGLKYTKILKDDGFVVLELDPPCKFTVQDAKGLKIKYLYFVKGCNTLARGWVVGTISSTVRLQ : UniRef90_P0C6X6
UniRef90_D9J1Z2 : KMKERAVKASSDGDACSNGKALFGKHFMYALISNDGNLKYVKWEGNNDVITIELEQPLKFYVEGANGPEIKHLYFVKNLNTLRRGAVLGYIGATIRLQ : UniRef90_D9J1Z2
UniRef90_B7T059 : KLREKAVKASADGDAFGSGKALMADEFMYAFIAAENNLKYVKWESHNDVIPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRLQ : UniRef90_B7T059
UniRef90_W6A0M8 : -LKTMVVSAGQQTNCNTSSLAYYGRKMLMALLSDNAYLKWVRVEGKDGFVSVELQPPCKFLIAGPKGPEIRYLYFVKNLNNLHRGQVLGHIAATVRLQ : UniRef90_W6A0M8
UniRef90_A3EXH3 : --RMNVVAGVSQTACVTDALAYYNAAHVMAILADVDGLAFAKVEKSDGFVILELEPPCKFMIDTPKGPALKYLYFTKGLKNLCRGTVLGTLACTVRLH : UniRef90_A3EXH3
UniRef90_D5HK01 : -LRQMSCAAGTTQTACTDDNALYNNAFVLALLSDHQDLKWARFPKSDGTGTIELEPPCRFVTDTPKGPKVKYLYFIKGLNNLNRGMVLGSLAATVRLQ : UniRef90_D5HK01
UniRef90_B6VDX7 : ------------NGKESTAKSFYGRKILVAVTSTKDDLRTVTCHTDNGKTILNLDPPMRFAHVIGGKQHVVYLYFIQNMSSLNRGTIIGHISGTTILQ : UniRef90_B6VDX7
UniRef90_I1U343 : -VKTKAVAGVDQAHCSVESKCYYGNSVVAAITSSNPNLRVASFLNEAGQIYVDLDPPCKFGMKVGDKVEVVYLYFIKNTRSIVRGMVLGAISNVVVLQ : UniRef90_I1U343
UniRef90_I1YZH5 : -------------------QILVNKTVVAAITSSNPNLKVASFLNEAGQIYVDLDPPCKFGMKVGDKVEVIYLYFIKNTRSIVRGMVLGAISNVVLLQ : UniRef90_I1YZH5
UniRef90_B2BW31 : ------VAGANQERCAVPANAYYGQHFVAAITSEDPTLKYASFTGASGLVVVELEPPCKFGVKTPDGVKVMHLYFVKNVKNIVRGMVLGALTNVVALQ : UniRef90_B2BW31
UniRef90_H9BR16 : ----------------STGKTFYGNKILVAVTSTNDNLRTVTVTKDDGKVVLNLEQPMRFAHMVNGKHLNTYLYFVANIKTIYRGMIIGHISSTVSLQ : UniRef90_H9BR16
UniRef90_H9BR24 : -----------------------GKKICVAITSDVDNLTSVVLNGDSGKVVLTLEPPLKFSHVVGGKLHLVYLYFVKDIRSIFRGMVIGHISSTTVLQ : UniRef90_H9BR24
UniRef90_D7SA40 : KLKQRAVKAEGNG-VTAEGKALYNNTFMYAFLADKPDLKYVKWEHDGGVNTVELE------------------------------------------- : UniRef90_D7SA40

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91------ :
OrigSeq         : KMKVKATKGEGDGGITSEGNALYNNAFMYAYVTTKPGMKYVKWEHDSGVVTVELEPPCRFVIDTPTGPQIKYLYFVKNLNNLRRGAVLGYIGATVRLQ : OrigSeq

Jnet            : ---EEEE--------E----HHH--EEEEEEEE----EEEEEEE----EEEEE-----EEEEE-----EEEEEEEE-----HHHHHHHHHHHHHEE-- : Jnet
jhmm            : ---EEEE-------EE----HHHHHHEEEEEEE----EEEEEEE----EEEEE-----EEEEE-----EEEEEEEE-----H-HHHHHHHHHHHEE-- : jhmm
jpssm           : --EEEEEE-------E---------EEEEEEEE----EEEEEEE----EEEEEE----EEEEE-----EEEEEEEE----HHHHHHHHHHHHHEEE-- : jpssm

Lupas 14        : -------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : -------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : -------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : -----BB-B-----B-B-B-BBBB-BBBBBBBB----BBBB-B------BBB-B-BBB-BBB-B-----BBBBBBB--B-BBBBBBBBB-BBBBB-B- : Jnet_25
Jnet_5          : --------------------BB----BBBBBB-----B--B-B--------B-B---B-B---------B-BBBBB--B--B--B-BBB-B------- : Jnet_5
Jnet_0          : --------------------B-------BBB--------------------------------------------------B--B-B----------- : Jnet_0
Jnet Rel        : 98137761577776101452010223899998648855899985588558997168861788637885588988852675163899988874014508 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.