SILENT_MODE
BLOCK_FILE jp_5E36OyV.concise.blc
MAX_NSEQ 172
MAX_INPUT_LEN 174
OUTPUT_FILE jp_5E36OyV.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 101 161   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 162 101 171 H SPACE
SUB_CHARS 1 162 101 171 E SPACE
SUB_CHARS 1 162 101 171 - SPACE
HELIX 4 165 19
COLOUR_TEXT_REGION 4 165 19 165 50
HELIX 32 165 45
COLOUR_TEXT_REGION 32 165 45 165 50
HELIX 59 165 68
COLOUR_TEXT_REGION 59 165 68 165 50
HELIX 79 165 99
COLOUR_TEXT_REGION 79 165 99 165 50
STRAND 22 170 25
COLOUR_TEXT_REGION 22 170 25 170 51
HELIX 4 170 14
COLOUR_TEXT_REGION 4 170 14 170 50
HELIX 16 170 21
COLOUR_TEXT_REGION 16 170 21 170 50
HELIX 30 170 45
COLOUR_TEXT_REGION 30 170 45 170 50
HELIX 59 170 68
COLOUR_TEXT_REGION 59 170 68 170 50
HELIX 79 170 99
COLOUR_TEXT_REGION 79 170 99 170 50
STRAND 19 171 19
COLOUR_TEXT_REGION 19 171 19 171 51
HELIX 6 171 18
COLOUR_TEXT_REGION 6 171 18 171 50
HELIX 35 171 45
COLOUR_TEXT_REGION 35 171 45 171 50
HELIX 59 171 68
COLOUR_TEXT_REGION 59 171 68 171 50
HELIX 79 171 99
COLOUR_TEXT_REGION 79 171 99 171 50