SILENT_MODE BLOCK_FILE jp__JfNTVw.concise.blc MAX_NSEQ 973 MAX_INPUT_LEN 975 OUTPUT_FILE jp__JfNTVw.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 131 962 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 963 131 972 H SPACE SUB_CHARS 1 963 131 972 E SPACE SUB_CHARS 1 963 131 972 - SPACE HELIX 2 966 9 COLOUR_TEXT_REGION 2 966 9 966 50 HELIX 12 966 28 COLOUR_TEXT_REGION 12 966 28 966 50 HELIX 30 966 49 COLOUR_TEXT_REGION 30 966 49 966 50 HELIX 59 966 70 COLOUR_TEXT_REGION 59 966 70 966 50 HELIX 79 966 94 COLOUR_TEXT_REGION 79 966 94 966 50 HELIX 99 966 106 COLOUR_TEXT_REGION 99 966 106 966 50 HELIX 112 966 129 COLOUR_TEXT_REGION 112 966 129 966 50 HELIX 2 971 27 COLOUR_TEXT_REGION 2 971 27 971 50 HELIX 30 971 49 COLOUR_TEXT_REGION 30 971 49 971 50 HELIX 59 971 70 COLOUR_TEXT_REGION 59 971 70 971 50 HELIX 80 971 95 COLOUR_TEXT_REGION 80 971 95 971 50 HELIX 99 971 106 COLOUR_TEXT_REGION 99 971 106 971 50 HELIX 112 971 129 COLOUR_TEXT_REGION 112 971 129 971 50 HELIX 2 972 9 COLOUR_TEXT_REGION 2 972 9 972 50 HELIX 12 972 29 COLOUR_TEXT_REGION 12 972 29 972 50 HELIX 32 972 48 COLOUR_TEXT_REGION 32 972 48 972 50 HELIX 59 972 70 COLOUR_TEXT_REGION 59 972 70 972 50 HELIX 79 972 94 COLOUR_TEXT_REGION 79 972 94 972 50 HELIX 98 972 106 COLOUR_TEXT_REGION 98 972 106 972 50 HELIX 112 972 129 COLOUR_TEXT_REGION 112 972 129 972 50