SILENT_MODE
BLOCK_FILE jp_GMkkwkU.concise.blc
MAX_NSEQ 561
MAX_INPUT_LEN 563
OUTPUT_FILE jp_GMkkwkU.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 71 550   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 551 71 560 H SPACE
SUB_CHARS 1 551 71 560 E SPACE
SUB_CHARS 1 551 71 560 - SPACE
STRAND 4 554 11
COLOUR_TEXT_REGION 4 554 11 554 51
STRAND 15 554 20
COLOUR_TEXT_REGION 15 554 20 554 51
STRAND 29 554 32
COLOUR_TEXT_REGION 29 554 32 554 51
STRAND 37 554 42
COLOUR_TEXT_REGION 37 554 42 554 51
STRAND 47 554 53
COLOUR_TEXT_REGION 47 554 53 554 51
STRAND 61 554 61
COLOUR_TEXT_REGION 61 554 61 554 51
STRAND 63 554 67
COLOUR_TEXT_REGION 63 554 67 554 51
STRAND 3 559 11
COLOUR_TEXT_REGION 3 559 11 559 51
STRAND 15 559 20
COLOUR_TEXT_REGION 15 559 20 559 51
STRAND 29 559 32
COLOUR_TEXT_REGION 29 559 32 559 51
STRAND 36 559 42
COLOUR_TEXT_REGION 36 559 42 559 51
STRAND 47 559 53
COLOUR_TEXT_REGION 47 559 53 559 51
STRAND 61 559 67
COLOUR_TEXT_REGION 61 559 67 559 51
STRAND 4 560 11
COLOUR_TEXT_REGION 4 560 11 560 51
STRAND 15 560 20
COLOUR_TEXT_REGION 15 560 20 560 51
STRAND 29 560 32
COLOUR_TEXT_REGION 29 560 32 560 51
STRAND 37 560 42
COLOUR_TEXT_REGION 37 560 42 560 51
STRAND 48 560 53
COLOUR_TEXT_REGION 48 560 53 560 51
STRAND 60 560 61
COLOUR_TEXT_REGION 60 560 61 560 51
STRAND 64 560 67
COLOUR_TEXT_REGION 64 560 67 560 51