Last position-specific scoring matrix computed, weighted observed percentages rounded down, information per position, and relative weight of gapless real matches to pseudocounts A R N D C Q E G H I L K M F P S T W Y V A R N D C Q E G H I L K M F P S T W Y V 1 D -2 -2 0 6 -5 0 4 -2 -1 -4 -4 -1 -4 -4 -2 -1 -2 -5 -4 -4 0 0 0 60 0 0 40 0 0 0 0 0 0 0 0 0 0 0 0 0 1.04 0.28 2 M -2 1 1 -2 -3 3 -1 -3 2 -1 1 -1 6 -2 -3 1 -1 -3 -2 -1 0 8 6 0 0 20 0 0 5 0 7 0 42 0 0 12 0 0 0 0 0.39 0.28 3 L -2 -3 -4 -5 -2 -3 -4 -5 -4 2 5 -3 1 0 -4 -3 -2 -3 -2 0 0 0 0 0 0 0 0 0 0 12 88 0 0 0 0 0 0 0 0 0 0.78 0.28 4 D -3 -2 1 7 -4 -1 1 -2 -2 -4 -5 -2 -4 -4 -2 -1 -2 -5 -4 -4 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1.39 0.28 5 L 0 -2 -3 -3 -2 -2 -3 -3 -3 0 3 1 0 1 1 -1 -2 -3 -1 1 6 0 0 0 0 0 0 0 0 0 49 11 0 8 8 6 0 0 0 12 0.30 0.28 6 G 3 -2 -1 0 -3 3 1 3 -2 -3 -3 -1 -2 -4 -2 0 -1 -3 -3 -2 38 0 0 5 0 23 6 24 0 0 0 0 0 0 0 5 0 0 0 0 0.46 0.30 7 A 3 -3 -2 -3 -2 -2 -2 -2 -3 0 2 -2 0 -2 -2 0 3 -3 -2 1 32 0 0 0 0 0 0 0 0 0 27 0 0 0 0 0 30 0 0 11 0.36 0.30 8 A 5 -2 -3 -3 5 -2 -2 -1 -3 -2 -2 0 -2 -3 -2 0 -1 -4 -3 1 68 0 0 0 14 0 0 0 0 0 0 8 0 0 0 0 0 0 0 9 0.58 0.30 9 K -2 5 -1 -2 -4 0 -1 -3 -1 -4 -3 4 -2 -3 -3 -1 -2 -3 1 -3 0 49 0 0 0 0 0 0 0 0 0 42 0 0 0 0 0 0 8 0 0.82 0.30 10 A 3 -2 -1 3 -2 -1 1 -2 -2 -2 -1 -2 -2 1 -2 1 -1 -3 -2 -2 42 0 0 21 0 0 7 0 0 0 7 0 0 8 0 14 0 0 0 0 0.34 0.30 11 N -2 -2 6 2 -4 -1 -1 2 -1 -2 -4 -1 -3 -4 -3 0 -1 -5 -3 -3 0 0 73 8 0 0 0 14 0 5 0 0 0 0 0 0 0 0 0 0 0.88 0.30 12 L -2 -3 -4 -5 -2 -3 -4 -5 -4 1 5 -3 1 0 -4 -3 -2 -3 -2 0 0 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0.89 0.30 13 E 0 -2 -1 3 -3 0 4 -2 -2 -3 -4 -1 -3 -4 -2 2 1 -4 -3 -3 9 0 0 23 0 0 38 0 0 0 0 0 0 0 0 18 12 0 0 0 0.56 0.30 14 K -1 1 -1 -2 -4 0 0 -2 -2 -3 -3 6 1 -4 -2 0 -1 -4 -3 -3 0 0 0 0 0 0 0 0 0 0 0 86 7 0 0 7 0 0 0 0 0.80 0.30 15 A 5 -2 -2 -3 -1 -2 -2 -1 -2 -2 -2 -2 -2 -3 -2 1 -1 -4 -3 -1 93 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 0 0 0.78 0.30 16 Q -2 -1 1 -2 -3 6 0 -3 1 -2 2 0 0 -3 -3 -1 -2 -3 -2 -2 0 0 7 0 0 62 0 0 4 0 27 0 0 0 0 0 0 0 0 0 0.62 0.30 17 S 2 -1 -1 -1 -2 2 -1 -1 -2 -3 -3 -1 -2 -4 2 4 0 -4 -3 -2 14 0 0 0 0 14 0 0 0 0 0 0 0 0 8 63 0 0 0 0 0.59 0.30 18 E 0 -1 -1 0 -4 5 4 -3 -1 -4 -3 0 -2 -4 2 -1 -2 -3 -3 -3 7 0 0 0 0 41 44 0 0 0 0 0 0 0 8 0 0 0 0 0 0.77 0.30 19 L -2 -3 -4 -5 -2 -3 -4 -5 -4 1 5 -3 1 1 -4 -3 -2 -2 -1 0 0 0 0 0 0 0 0 0 0 0 94 0 0 6 0 0 0 0 0 0 0.83 0.30 20 L 3 -2 -1 -2 -2 1 -1 -2 -2 -2 0 -1 1 -3 -2 3 1 -3 -2 0 29 0 0 0 0 7 0 0 0 0 13 0 4 0 0 35 7 0 0 4 0.32 0.30 21 G 2 -2 -1 -2 -2 1 -2 4 -2 -3 -2 -2 -2 -3 -2 3 -1 -3 -3 -2 23 0 0 0 0 7 0 38 0 0 5 0 0 0 0 27 0 0 0 0 0.53 0.30 22 A 5 -2 -2 -3 -1 -2 -2 -1 -3 -1 -2 -2 -1 -3 -2 0 2 -4 -3 1 70 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 0 0 15 0.55 0.30 23 A 2 -2 -1 -2 -2 -1 -2 -2 -2 -2 -3 -1 -2 -3 4 4 1 -4 -3 0 23 0 0 0 0 0 0 0 0 0 0 0 0 0 23 43 5 0 0 7 0.59 0.30 24 D -2 -2 1 6 -3 -1 0 -2 -2 -3 -4 -1 -3 -4 -2 1 3 -5 -3 -3 0 0 5 61 0 0 0 0 0 0 0 0 0 0 0 7 28 0 0 0 0.83 0.30 25 E -2 -1 -1 3 -4 1 6 -3 -1 -3 -3 0 -3 -4 -2 -1 -2 -4 -3 -1 0 0 0 19 0 0 74 0 0 0 0 0 0 0 0 0 0 0 0 7 0.89 0.30 26 A 3 -2 -2 -1 -2 -1 2 -2 -2 -2 -2 -1 -2 -3 0 0 3 -4 -3 0 35 0 0 0 0 0 21 0 0 0 0 0 0 0 4 0 31 0 0 9 0.39 0.30 27 T 4 -1 -2 -2 -2 1 0 0 -2 -3 -3 1 -2 -3 -2 0 1 -4 -3 -1 65 0 0 0 0 7 5 5 0 0 0 9 0 0 0 0 10 0 0 0 0.49 0.30 28 R -2 5 -1 -2 -4 0 0 -3 -1 -4 -3 5 -2 -4 -2 -1 -2 -4 -3 -3 0 50 0 0 0 0 0 0 0 0 0 50 0 0 0 0 0 0 0 0 0.93 0.30 29 A 4 -3 -3 -3 -1 -2 -2 -2 -3 0 -1 -2 -1 -3 -2 0 1 -4 -2 3 55 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 0 0 39 0.50 0.30 30 E -2 -1 -1 1 -5 1 6 -3 -1 -4 -4 0 -3 -4 -2 -1 -2 -4 -3 -3 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 1.18 0.30 31 I 5 -3 -3 -3 -1 -2 -2 -1 -3 2 -1 -2 -1 -2 -2 0 -1 -4 -3 1 70 0 0 0 0 0 0 0 0 23 0 0 0 0 0 0 0 0 0 7 0.54 0.30 32 Q -2 0 -1 -1 -4 7 1 -3 0 -3 -1 0 -1 -4 -2 -1 -2 -3 -2 -3 0 0 0 0 0 93 0 0 0 0 7 0 0 0 0 0 0 0 0 0 1.03 0.30 33 I -2 -4 -4 -4 -2 -4 -4 -5 -4 6 1 -4 0 -1 -4 -3 -2 -4 -2 2 0 0 0 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0.88 0.28 34 R 1 3 2 -1 -3 -1 0 -2 2 -2 -1 0 1 -3 -2 -1 2 -4 -2 -2 17 24 16 0 0 0 7 0 7 0 4 4 6 0 0 0 15 0 0 0 0.28 0.28 35 I -2 -3 0 -3 -2 -3 -3 -4 -4 5 0 -3 0 -1 -3 -3 -1 -4 -2 4 0 0 7 0 0 0 0 0 0 51 0 0 0 0 0 0 0 0 0 42 0.60 0.28 36 E -2 -1 -1 2 -5 1 6 -3 -1 -4 -4 0 -3 -4 -2 -1 -2 -4 -3 -3 0 0 0 6 0 0 94 0 0 0 0 0 0 0 0 0 0 0 0 0 1.10 0.28 37 A 5 -3 -3 -3 4 -2 -2 -1 -3 -1 -2 -2 -1 -3 -2 0 -1 -3 -3 2 70 0 0 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 18 0.57 0.28 38 N -1 -1 5 -1 -3 -1 -1 0 5 -4 -4 -1 -3 -2 -3 2 -1 -3 3 -3 0 0 42 0 0 0 0 5 19 0 0 0 0 0 0 21 0 0 12 0 0.61 0.28 39 E -2 -1 -1 1 -5 1 6 -3 -1 -4 -4 0 -3 -4 -2 -1 -2 -4 -3 -3 0 0 0 0 0 0 100 0 0 0 0 0 0 0 0 0 0 0 0 0 1.15 0.28 40 A 5 -2 -2 -2 -1 -2 -2 -1 -2 -2 -2 -2 -2 -3 -2 2 -1 -4 -3 0 80 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 0 0 0 7 0.63 0.28 41 L -2 -3 -4 -4 -2 -3 -4 -5 -4 3 4 -3 3 -1 -4 -3 -2 -3 -2 1 0 0 0 0 0 0 0 0 0 27 61 0 12 0 0 0 0 0 0 0 0.66 0.28 42 V -1 -3 -4 -4 -2 -3 -4 -4 -4 3 1 -3 0 -1 -3 -3 -1 -4 -2 5 0 0 0 0 0 0 0 0 0 18 12 0 0 0 0 0 0 0 0 69 0.66 0.28 43 K 0 1 2 -1 -4 0 0 -2 -1 -4 -3 5 -2 -4 -2 0 -1 -4 -3 -3 6 0 12 0 0 0 0 0 0 0 0 76 0 0 0 6 0 0 0 0 0.70 0.28 44 A 5 -2 -2 -3 -1 -2 -2 -1 -3 -2 -2 -2 -2 -3 -2 0 -1 -3 -3 -1 100 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0.81 0.28 45 L -2 -3 -4 -4 -2 -3 -4 -5 -4 1 5 -3 1 0 -4 -3 -2 -3 -2 2 0 0 0 0 0 0 0 0 0 0 86 0 0 0 0 0 0 0 0 14 0.72 0.26 K Lambda Standard Ungapped 0.1244 0.3087 Standard Gapped 0.0410 0.2670 PSI Ungapped 0.1626 0.3168 PSI Gapped 0.0498 0.2670