SILENT_MODE
BLOCK_FILE jp_TzBzz2T.concise.blc
MAX_NSEQ 50
MAX_INPUT_LEN 50
OUTPUT_FILE jp_TzBzz2T.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 63 9   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 10 63 19 H SPACE
SUB_CHARS 1 10 63 19 E SPACE
SUB_CHARS 1 10 63 19 - SPACE
STRAND 9 13 10
COLOUR_TEXT_REGION 9 13 10 13 51
STRAND 36 13 40
COLOUR_TEXT_REGION 36 13 40 13 51
STRAND 44 13 50
COLOUR_TEXT_REGION 44 13 50 13 51
STRAND 61 13 61
COLOUR_TEXT_REGION 61 13 61 13 51
HELIX 2 13 8
COLOUR_TEXT_REGION 2 13 8 13 50
HELIX 23 13 27
COLOUR_TEXT_REGION 23 13 27 13 50
HELIX 59 13 60
COLOUR_TEXT_REGION 59 13 60 13 50
STRAND 8 18 10
COLOUR_TEXT_REGION 8 18 10 18 51
STRAND 37 18 40
COLOUR_TEXT_REGION 37 18 40 18 51
STRAND 44 18 50
COLOUR_TEXT_REGION 44 18 50 18 51
HELIX 0 18 7
COLOUR_TEXT_REGION 0 18 7 18 50
HELIX 23 18 27
COLOUR_TEXT_REGION 23 18 27 18 50
HELIX 60 18 60
COLOUR_TEXT_REGION 60 18 60 18 50
STRAND 10 19 10
COLOUR_TEXT_REGION 10 19 10 19 51
STRAND 36 19 40
COLOUR_TEXT_REGION 36 19 40 19 51
STRAND 44 19 49
COLOUR_TEXT_REGION 44 19 49 19 51
STRAND 61 19 61
COLOUR_TEXT_REGION 61 19 61 19 51
HELIX 2 19 9
COLOUR_TEXT_REGION 2 19 9 19 50
HELIX 22 19 28
COLOUR_TEXT_REGION 22 19 28 19 50
HELIX 57 19 60
COLOUR_TEXT_REGION 57 19 60 19 50