QUERY           : SAVLRGFLILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSQTATKRIRM : QUERY 
UniRef90_U5N4D4 : SAVLRGFLILGKANSKYGPVLTIAELDKLGRGEKANVLIGQGDTVLVMKRKRDSQTAIKRIRL : UniRef90_U5N4D4
UniRef90_Q809Q3 : SAVLRGFLILGKEDRRYGPALSINELINLAKGEKANVLIGQGDVVLVMKRKRDS--------- : UniRef90_Q809Q3
UniRef90_Q9QLL6 : NAVLAGFLVSGKYDPDLGDFKTIEELERLKPGEKANILLYQGKPVKVVKRKRYSSQGIKRQRM : UniRef90_Q9QLL6
UniRef90_D2CED4 : SAVLRGFLILGKEDKRYGPALSINELSNLAKGEKANVLIGQGD-------------------- : UniRef90_D2CED4
UniRef90_Q6JKP1 : SAVLRGFLILGKEDKRYGPALSINELSNLAKG------------------------------- : UniRef90_Q6JKP1

                : 1---------11--------21--------31--------41--------51--------61- :
OrigSeq         : SAVLRGFLILGKEDRRYGPALSINELSNLAKGEKANVLIGQGDVVLVMKRKRDSQTATKRIRM : OrigSeq

Jnet            : -HHHHHHHEE------------HHHHH--------EEEEE---EEEEEEE--------HHE-- : Jnet
jhmm            : HHHHHHHEEE------------HHHHH---------EEEE---EEEEEEE---------H--- : jhmm
jpssm           : -HHHHHHHHE-----------HHHHHHH-------EEEEE---EEEEEE-------HHHHE-- : jpssm

Lupas 14        : --------------------------------------------------------------- : Lupas 14
Lupas 21        : --------------------------------------------------------------- : Lupas 21
Lupas 28        : --------------------------------------------------------------- : Lupas 28

Jnet_25         : --BBBBBBBBB-----BB-B-BB--B--B--B--BBBBBB-B-BBBBB--------B---B-- : Jnet_25
Jnet_5          : -----BBBB-------------B--B----------BB------B-BB--------------- : Jnet_5
Jnet_0          : -----B--------------------------------------------------------- : Jnet_0
Jnet Rel        : 315666410014678877631178775037787640688648658998516776102221049 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.