SILENT_MODE
BLOCK_FILE jp_n4Cubcv.concise.blc
MAX_NSEQ 812
MAX_INPUT_LEN 814
OUTPUT_FILE jp_n4Cubcv.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 84 801   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 802 84 811 H SPACE
SUB_CHARS 1 802 84 811 E SPACE
SUB_CHARS 1 802 84 811 - SPACE
STRAND 6 805 14
COLOUR_TEXT_REGION 6 805 14 805 51
STRAND 17 805 20
COLOUR_TEXT_REGION 17 805 20 805 51
STRAND 33 805 38
COLOUR_TEXT_REGION 33 805 38 805 51
STRAND 44 805 49
COLOUR_TEXT_REGION 44 805 49 805 51
HELIX 24 805 29
COLOUR_TEXT_REGION 24 805 29 805 50
HELIX 57 805 82
COLOUR_TEXT_REGION 57 805 82 805 50
STRAND 6 810 14
COLOUR_TEXT_REGION 6 810 14 810 51
STRAND 17 810 20
COLOUR_TEXT_REGION 17 810 20 810 51
STRAND 33 810 38
COLOUR_TEXT_REGION 33 810 38 810 51
STRAND 44 810 49
COLOUR_TEXT_REGION 44 810 49 810 51
HELIX 24 810 29
COLOUR_TEXT_REGION 24 810 29 810 50
HELIX 57 810 82
COLOUR_TEXT_REGION 57 810 82 810 50
STRAND 6 811 13
COLOUR_TEXT_REGION 6 811 13 811 51
STRAND 17 811 20
COLOUR_TEXT_REGION 17 811 20 811 51
STRAND 32 811 38
COLOUR_TEXT_REGION 32 811 38 811 51
STRAND 44 811 49
COLOUR_TEXT_REGION 44 811 49 811 51
HELIX 24 811 29
COLOUR_TEXT_REGION 24 811 29 811 50
HELIX 57 811 82
COLOUR_TEXT_REGION 57 811 82 811 50